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Cluster: Rep_549_CGC62

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_549_c_1 Rep_549_c_1_292 319836 321746 - 2.A.16.2.2
pfam Rep_549_c_1 Rep_549_c_1_293 321760 323487 - DHH | DHHA1 | RecJ_OB
pfam Rep_549_c_1 Rep_549_c_1_294 323789 324358 + Sua5_yciO_yrdC
TC Rep_549_c_1 Rep_549_c_1_295 324364 325767 + 9.B.18.1.3
TC Rep_549_c_1 Rep_549_c_1_296 325771 327561 + 2.A.49.6.1
pfam Rep_549_c_1 Rep_549_c_1_297 327568 328542 + Formyl_trans_N | Formyl_trans_C
pfam Rep_549_c_1 Rep_549_c_1_298 328586 329974 - DUF4270
CAZyme Rep_549_c_1 Rep_549_c_1_299 329984 330802 - GT5
Gene ID: Rep_549_c_1_292
Type: TC
Location: 319836 - 321746 (-)
Gene ID: Rep_549_c_1_293
Type: pfam
Location: 321760 - 323487 (-)
Gene ID: Rep_549_c_1_294
Type: pfam
Location: 323789 - 324358 (+)
Gene ID: Rep_549_c_1_295
Type: TC
Location: 324364 - 325767 (+)
Gene ID: Rep_549_c_1_296
Type: TC
Location: 325771 - 327561 (+)
Gene ID: Rep_549_c_1_297
Type: pfam
Location: 327568 - 328542 (+)
Gene ID: Rep_549_c_1_298
Type: pfam
Location: 328586 - 329974 (-)
Gene ID: Rep_549_c_1_299
Type: CAZyme
Location: 329984 - 330802 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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