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Cluster: Rep_549_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_549_c_1 Rep_549_c_1_30 34589 35863 + 9.A.40.2.4
NULL(UNKNOWN) Rep_549_c_1 Rep_549_c_1_31 35837 36115 - NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_549_c_1 Rep_549_c_1_32 36266 37141 + FecR
TC Rep_549_c_1 Rep_549_c_1_33 37160 39808 + 1.B.14.6.12
pfam Rep_549_c_1 Rep_549_c_1_34 39812 40822 + DUF4249
NULL(UNKNOWN) Rep_549_c_1 Rep_549_c_1_35 40872 40979 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_549_c_1 Rep_549_c_1_36 40956 42641 - CBM93 | CBM93 | GH33
NULL(UNKNOWN) Rep_549_c_1 Rep_549_c_1_37 42870 43361 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_549_c_1 Rep_549_c_1_38 43532 44536 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_549_c_1 Rep_549_c_1_39 44654 45976 + 2.A.66.1.10
Gene ID: Rep_549_c_1_30
Type: TC
Location: 34589 - 35863 (+)
Gene ID: Rep_549_c_1_31
Type:
Location: 35837 - 36115 (-)
Gene ID: Rep_549_c_1_32
Type: STP
Location: 36266 - 37141 (+)
Gene ID: Rep_549_c_1_33
Type: TC
Location: 37160 - 39808 (+)
Gene ID: Rep_549_c_1_34
Type: pfam
Location: 39812 - 40822 (+)
Gene ID: Rep_549_c_1_35
Type:
Location: 40872 - 40979 (+)
Gene ID: Rep_549_c_1_36
Type: CAZyme
Location: 40956 - 42641 (-)
Gene ID: Rep_549_c_1_37
Type:
Location: 42870 - 43361 (-)
Gene ID: Rep_549_c_1_38
Type:
Location: 43532 - 44536 (-)
Gene ID: Rep_549_c_1_39
Type: TC
Location: 44654 - 45976 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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