Cluster: Rep_549_CGC52
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_549
- CGC Family ID: CGCFAM_00003
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_549_c_0 | Rep_549_c_0_2898 | 3369434 | 3370732 | + | 2.A.66.1.36 |
| NULL(UNKNOWN) | Rep_549_c_0 | Rep_549_c_0_2899 | 3370783 | 3372225 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_549_c_0 | Rep_549_c_0_2900 | 3372230 | 3373594 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | Rep_549_c_0 | Rep_549_c_0_2901 | 3373591 | 3375150 | + | 2.A.50.2.1 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_2902 | 3375166 | 3376182 | + | GT2 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_2903 | 3376271 | 3377005 | + | GT2 |
| sulfatase | Rep_549_c_0 | Rep_549_c_0_2904 | 3377051 | 3377857 | + | S1_20 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_2905 | 3377956 | 3379602 | + | GT83 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_2906 | 3379611 | 3380348 | + | GT2 |
| TC | Rep_549_c_0 | Rep_549_c_0_2907 | 3380352 | 3380975 | + | 2.A.123.4.1 |
| pfam | Rep_549_c_0 | Rep_549_c_0_2908 | 3380982 | 3381989 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| TC | Rep_549_c_0 | Rep_549_c_0_2909 | 3381999 | 3382643 | + | 2.A.95.1.3 |
Gene ID: Rep_549_c_0_2898
Type: TC
Location: 3369434 - 3370732 (+)
Type: TC
Location: 3369434 - 3370732 (+)
Gene ID: Rep_549_c_0_2899
Type:
Location: 3370783 - 3372225 (+)
Type:
Location: 3370783 - 3372225 (+)
Gene ID: Rep_549_c_0_2900
Type: pfam
Location: 3372230 - 3373594 (+)
Type: pfam
Location: 3372230 - 3373594 (+)
Gene ID: Rep_549_c_0_2901
Type: TC
Location: 3373591 - 3375150 (+)
Type: TC
Location: 3373591 - 3375150 (+)
Gene ID: Rep_549_c_0_2902
Type: CAZyme
Location: 3375166 - 3376182 (+)
Type: CAZyme
Location: 3375166 - 3376182 (+)
Gene ID: Rep_549_c_0_2903
Type: CAZyme
Location: 3376271 - 3377005 (+)
Type: CAZyme
Location: 3376271 - 3377005 (+)
Gene ID: Rep_549_c_0_2904
Type: sulfatase
Location: 3377051 - 3377857 (+)
Type: sulfatase
Location: 3377051 - 3377857 (+)
Gene ID: Rep_549_c_0_2905
Type: CAZyme
Location: 3377956 - 3379602 (+)
Type: CAZyme
Location: 3377956 - 3379602 (+)
Gene ID: Rep_549_c_0_2906
Type: CAZyme
Location: 3379611 - 3380348 (+)
Type: CAZyme
Location: 3379611 - 3380348 (+)
Gene ID: Rep_549_c_0_2907
Type: TC
Location: 3380352 - 3380975 (+)
Type: TC
Location: 3380352 - 3380975 (+)
Gene ID: Rep_549_c_0_2908
Type: pfam
Location: 3380982 - 3381989 (+)
Type: pfam
Location: 3380982 - 3381989 (+)
Gene ID: Rep_549_c_0_2909
Type: TC
Location: 3381999 - 3382643 (+)
Type: TC
Location: 3381999 - 3382643 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides faecalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.