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Cluster: Rep_549_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_549_c_0 Rep_549_c_0_2278 2655886 2659224 + 1.B.14.6.2
TC Rep_549_c_0 Rep_549_c_0_2279 2659243 2660850 + 8.A.46.2.2
CAZyme Rep_549_c_0 Rep_549_c_0_2280 2661163 2663517 + GH139 | GH139
CAZyme Rep_549_c_0 Rep_549_c_0_2281 2663539 2665938 + GH3
sulfatase Rep_549_c_0 Rep_549_c_0_2282 2666005 2667486 + S1_7
CAZyme Rep_549_c_0 Rep_549_c_0_2283 2667502 2668707 + GH88
CAZyme Rep_549_c_0 Rep_549_c_0_2284 2668709 2669923 + GH154
Gene ID: Rep_549_c_0_2278
Type: TC
Location: 2655886 - 2659224 (+)
Gene ID: Rep_549_c_0_2279
Type: TC
Location: 2659243 - 2660850 (+)
Gene ID: Rep_549_c_0_2280
Type: CAZyme
Location: 2661163 - 2663517 (+)
Gene ID: Rep_549_c_0_2281
Type: CAZyme
Location: 2663539 - 2665938 (+)
Gene ID: Rep_549_c_0_2282
Type: sulfatase
Location: 2666005 - 2667486 (+)
Gene ID: Rep_549_c_0_2283
Type: CAZyme
Location: 2667502 - 2668707 (+)
Gene ID: Rep_549_c_0_2284
Type: CAZyme
Location: 2668709 - 2669923 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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