Cluster: Rep_549_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_549
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_549_c_0 | Rep_549_c_0_356 | 393463 | 395880 | - | GH127 |
| pfam | Rep_549_c_0 | Rep_549_c_0_357 | 396097 | 399099 | - | GH123_N | Glyco_hydro_123_N_2 |
| TC | Rep_549_c_0 | Rep_549_c_0_358 | 399152 | 402433 | - | 9.A.25.1.1 |
| pfam | Rep_549_c_0 | Rep_549_c_0_359 | 402515 | 404278 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_549_c_0 | Rep_549_c_0_360 | 404299 | 407760 | - | 1.B.14.6.1 |
Gene ID: Rep_549_c_0_356
Type: CAZyme
Location: 393463 - 395880 (-)
Type: CAZyme
Location: 393463 - 395880 (-)
Gene ID: Rep_549_c_0_357
Type: pfam
Location: 396097 - 399099 (-)
Type: pfam
Location: 396097 - 399099 (-)
Gene ID: Rep_549_c_0_358
Type: TC
Location: 399152 - 402433 (-)
Type: TC
Location: 399152 - 402433 (-)
Gene ID: Rep_549_c_0_359
Type: pfam
Location: 402515 - 404278 (-)
Type: pfam
Location: 402515 - 404278 (-)
Gene ID: Rep_549_c_0_360
Type: TC
Location: 404299 - 407760 (-)
Type: TC
Location: 404299 - 407760 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides faecalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.