Cluster: Rep_549_CGC35
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_549
- CGC Family ID: CGCFAM_06464
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_549_c_0 | Rep_549_c_0_1900 | 2226727 | 2230071 | + | 1.B.14.6.1 |
| TC | Rep_549_c_0 | Rep_549_c_0_1901 | 2230086 | 2231708 | + | 8.A.46.1.3 |
| pfam | Rep_549_c_0 | Rep_549_c_0_1902 | 2231737 | 2232858 | + | SusE |
| pfam | Rep_549_c_0 | Rep_549_c_0_1903 | 2232871 | 2234013 | + | SusE |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_1904 | 2234140 | 2235255 | + | GH76 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_1905 | 2235340 | 2237487 | + | GH92 |
| TC | Rep_549_c_0 | Rep_549_c_0_1906 | 2237734 | 2238882 | + | 2.A.1.2.14 |
| TF | Rep_549_c_0 | Rep_549_c_0_1907 | 2238992 | 2239597 | + | GerE |
| STP | Rep_549_c_0 | Rep_549_c_0_1908 | 2239677 | 2240609 | + | FecR |
| TC | Rep_549_c_0 | Rep_549_c_0_1909 | 2240830 | 2244255 | + | 1.B.14.6.1 |
| pfam | Rep_549_c_0 | Rep_549_c_0_1910 | 2244267 | 2246306 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_549_c_0 | Rep_549_c_0_1911 | 2246374 | 2247105 | + | DUF4469 | HU-DNA_bdg |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_1912 | 2247293 | 2249755 | + | GH29 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_1913 | 2249835 | 2251160 | + | CE17 |
Gene ID: Rep_549_c_0_1900
Type: TC
Location: 2226727 - 2230071 (+)
Type: TC
Location: 2226727 - 2230071 (+)
Gene ID: Rep_549_c_0_1901
Type: TC
Location: 2230086 - 2231708 (+)
Type: TC
Location: 2230086 - 2231708 (+)
Gene ID: Rep_549_c_0_1902
Type: pfam
Location: 2231737 - 2232858 (+)
Type: pfam
Location: 2231737 - 2232858 (+)
Gene ID: Rep_549_c_0_1903
Type: pfam
Location: 2232871 - 2234013 (+)
Type: pfam
Location: 2232871 - 2234013 (+)
Gene ID: Rep_549_c_0_1904
Type: CAZyme
Location: 2234140 - 2235255 (+)
Type: CAZyme
Location: 2234140 - 2235255 (+)
Gene ID: Rep_549_c_0_1905
Type: CAZyme
Location: 2235340 - 2237487 (+)
Type: CAZyme
Location: 2235340 - 2237487 (+)
Gene ID: Rep_549_c_0_1906
Type: TC
Location: 2237734 - 2238882 (+)
Type: TC
Location: 2237734 - 2238882 (+)
Gene ID: Rep_549_c_0_1907
Type: TF
Location: 2238992 - 2239597 (+)
Type: TF
Location: 2238992 - 2239597 (+)
Gene ID: Rep_549_c_0_1908
Type: STP
Location: 2239677 - 2240609 (+)
Type: STP
Location: 2239677 - 2240609 (+)
Gene ID: Rep_549_c_0_1909
Type: TC
Location: 2240830 - 2244255 (+)
Type: TC
Location: 2240830 - 2244255 (+)
Gene ID: Rep_549_c_0_1910
Type: pfam
Location: 2244267 - 2246306 (+)
Type: pfam
Location: 2244267 - 2246306 (+)
Gene ID: Rep_549_c_0_1911
Type: pfam
Location: 2246374 - 2247105 (+)
Type: pfam
Location: 2246374 - 2247105 (+)
Gene ID: Rep_549_c_0_1912
Type: CAZyme
Location: 2247293 - 2249755 (+)
Type: CAZyme
Location: 2247293 - 2249755 (+)
Gene ID: Rep_549_c_0_1913
Type: CAZyme
Location: 2249835 - 2251160 (+)
Type: CAZyme
Location: 2249835 - 2251160 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides faecalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.