Cluster: Rep_549_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_549
- CGC Family ID: CGCFAM_09624
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_549_c_0 | Rep_549_c_0_1827 | 2163907 | 2164260 | + | GH16_3 |
| pfam | Rep_549_c_0 | Rep_549_c_0_1828 | 2164288 | 2165046 | + | GDPD |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_1829 | 2165149 | 2166990 | - | GH13_46 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_1830 | 2167098 | 2169479 | - | GH3 |
| NULL(UNKNOWN) | Rep_549_c_0 | Rep_549_c_0_1831 | 2169582 | 2169674 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_549_c_0 | Rep_549_c_0_1832 | 2169743 | 2171590 | + | 3.A.1.106.1 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_1833 | 2171608 | 2174061 | + | GH95 |
Gene ID: Rep_549_c_0_1827
Type: CAZyme
Location: 2163907 - 2164260 (+)
Type: CAZyme
Location: 2163907 - 2164260 (+)
Gene ID: Rep_549_c_0_1828
Type: pfam
Location: 2164288 - 2165046 (+)
Type: pfam
Location: 2164288 - 2165046 (+)
Gene ID: Rep_549_c_0_1829
Type: CAZyme
Location: 2165149 - 2166990 (-)
Type: CAZyme
Location: 2165149 - 2166990 (-)
Gene ID: Rep_549_c_0_1830
Type: CAZyme
Location: 2167098 - 2169479 (-)
Type: CAZyme
Location: 2167098 - 2169479 (-)
Gene ID: Rep_549_c_0_1831
Type:
Location: 2169582 - 2169674 (+)
Type:
Location: 2169582 - 2169674 (+)
Gene ID: Rep_549_c_0_1832
Type: TC
Location: 2169743 - 2171590 (+)
Type: TC
Location: 2169743 - 2171590 (+)
Gene ID: Rep_549_c_0_1833
Type: CAZyme
Location: 2171608 - 2174061 (+)
Type: CAZyme
Location: 2171608 - 2174061 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides faecalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.