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Cluster: Rep_549_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_549_c_0 Rep_549_c_0_279 284026 285543 - 2.A.17.1.7
pfam Rep_549_c_0 Rep_549_c_0_280 285574 286644 - DUF4831
pfam Rep_549_c_0 Rep_549_c_0_281 286828 288303 - SusD-like | SusD-like | SusD-like_2
TC Rep_549_c_0 Rep_549_c_0_282 288328 291654 - 1.B.14.6.13
CAZyme Rep_549_c_0 Rep_549_c_0_283 292632 294755 + GH13_8
pfam Rep_549_c_0 Rep_549_c_0_284 294765 295739 + PMI_typeI_cat | MPI_cupin_dom
pfam Rep_549_c_0 Rep_549_c_0_285 295819 296382 + DNA_binding_1
TC Rep_549_c_0 Rep_549_c_0_286 296471 298141 + 2.A.81.1.2
Gene ID: Rep_549_c_0_279
Type: TC
Location: 284026 - 285543 (-)
Gene ID: Rep_549_c_0_280
Type: pfam
Location: 285574 - 286644 (-)
Gene ID: Rep_549_c_0_281
Type: pfam
Location: 286828 - 288303 (-)
Gene ID: Rep_549_c_0_282
Type: TC
Location: 288328 - 291654 (-)
Gene ID: Rep_549_c_0_283
Type: CAZyme
Location: 292632 - 294755 (+)
Gene ID: Rep_549_c_0_284
Type: pfam
Location: 294765 - 295739 (+)
Gene ID: Rep_549_c_0_285
Type: pfam
Location: 295819 - 296382 (+)
Gene ID: Rep_549_c_0_286
Type: TC
Location: 296471 - 298141 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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