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Cluster: Rep_549_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_549_c_0 Rep_549_c_0_251 249812 253192 + 3.A.5.1.1
pfam Rep_549_c_0 Rep_549_c_0_252 253295 254470 + Gly_kinase
NULL(UNKNOWN) Rep_549_c_0 Rep_549_c_0_253 254580 255311 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_549_c_0 Rep_549_c_0_254 255559 257442 + 3.A.1.120.6
TC Rep_549_c_0 Rep_549_c_0_255 257457 258632 + 2.A.1.46.5
NULL(UNKNOWN) Rep_549_c_0 Rep_549_c_0_256 258903 259280 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_549_c_0 Rep_549_c_0_257 259371 260618 - DUF4934 | DUF5128 | DUF5128
CAZyme Rep_549_c_0 Rep_549_c_0_258 260725 262308 - GH109
NULL(UNKNOWN) Rep_549_c_0 Rep_549_c_0_259 262428 262565 - NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_549_c_0 Rep_549_c_0_260 262802 264001 + Aminotran_1_2
TC Rep_549_c_0 Rep_549_c_0_261 264016 265260 + 3.A.1.125.1
Gene ID: Rep_549_c_0_251
Type: TC
Location: 249812 - 253192 (+)
Gene ID: Rep_549_c_0_252
Type: pfam
Location: 253295 - 254470 (+)
Gene ID: Rep_549_c_0_253
Type:
Location: 254580 - 255311 (+)
Gene ID: Rep_549_c_0_254
Type: TC
Location: 255559 - 257442 (+)
Gene ID: Rep_549_c_0_255
Type: TC
Location: 257457 - 258632 (+)
Gene ID: Rep_549_c_0_256
Type:
Location: 258903 - 259280 (+)
Gene ID: Rep_549_c_0_257
Type: pfam
Location: 259371 - 260618 (-)
Gene ID: Rep_549_c_0_258
Type: CAZyme
Location: 260725 - 262308 (-)
Gene ID: Rep_549_c_0_259
Type:
Location: 262428 - 262565 (-)
Gene ID: Rep_549_c_0_260
Type: STP
Location: 262802 - 264001 (+)
Gene ID: Rep_549_c_0_261
Type: TC
Location: 264016 - 265260 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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