Cluster: Rep_549_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_549
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_549_c_0 | Rep_549_c_0_944 | 1066264 | 1069647 | - | 1.B.14.6.1 |
| STP | Rep_549_c_0 | Rep_549_c_0_945 | 1069771 | 1070973 | - | FecR |
| STP | Rep_549_c_0 | Rep_549_c_0_946 | 1070977 | 1071594 | - | Sigma70_r4_2 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_947 | 1072032 | 1073066 | - | GH159 |
| pfam | Rep_549_c_0 | Rep_549_c_0_948 | 1073196 | 1074128 | - | MMR_HSR1 | RsgA_GTPase | RsgA_N |
| pfam | Rep_549_c_0 | Rep_549_c_0_949 | 1074128 | 1074691 | - | RRF |
| TC | Rep_549_c_0 | Rep_549_c_0_950 | 1074940 | 1076115 | - | 2.A.1.7.17 |
| pfam | Rep_549_c_0 | Rep_549_c_0_951 | 1076140 | 1076850 | - | AA_kinase |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_952 | 1077133 | 1079796 | - | CBM67 | GH78 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_953 | 1079829 | 1081934 | - | GH106 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_954 | 1081995 | 1082927 | - | GH106 |
| CAZyme | Rep_549_c_0 | Rep_549_c_0_955 | 1082955 | 1085708 | - | CBM67 | GH78 |
Gene ID: Rep_549_c_0_944
Type: TC
Location: 1066264 - 1069647 (-)
Type: TC
Location: 1066264 - 1069647 (-)
Gene ID: Rep_549_c_0_945
Type: STP
Location: 1069771 - 1070973 (-)
Type: STP
Location: 1069771 - 1070973 (-)
Gene ID: Rep_549_c_0_946
Type: STP
Location: 1070977 - 1071594 (-)
Type: STP
Location: 1070977 - 1071594 (-)
Gene ID: Rep_549_c_0_947
Type: CAZyme
Location: 1072032 - 1073066 (-)
Type: CAZyme
Location: 1072032 - 1073066 (-)
Gene ID: Rep_549_c_0_948
Type: pfam
Location: 1073196 - 1074128 (-)
Type: pfam
Location: 1073196 - 1074128 (-)
Gene ID: Rep_549_c_0_949
Type: pfam
Location: 1074128 - 1074691 (-)
Type: pfam
Location: 1074128 - 1074691 (-)
Gene ID: Rep_549_c_0_950
Type: TC
Location: 1074940 - 1076115 (-)
Type: TC
Location: 1074940 - 1076115 (-)
Gene ID: Rep_549_c_0_951
Type: pfam
Location: 1076140 - 1076850 (-)
Type: pfam
Location: 1076140 - 1076850 (-)
Gene ID: Rep_549_c_0_952
Type: CAZyme
Location: 1077133 - 1079796 (-)
Type: CAZyme
Location: 1077133 - 1079796 (-)
Gene ID: Rep_549_c_0_953
Type: CAZyme
Location: 1079829 - 1081934 (-)
Type: CAZyme
Location: 1079829 - 1081934 (-)
Gene ID: Rep_549_c_0_954
Type: CAZyme
Location: 1081995 - 1082927 (-)
Type: CAZyme
Location: 1081995 - 1082927 (-)
Gene ID: Rep_549_c_0_955
Type: CAZyme
Location: 1082955 - 1085708 (-)
Type: CAZyme
Location: 1082955 - 1085708 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides faecalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_549_c_0_951 | vegetarian > omnivore | 1.04100 | 0.03201 |