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Cluster: Rep_547_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_547_c_5 Rep_547_c_5_19 18729 20126 - GH23
pfam Rep_547_c_5 Rep_547_c_5_20 20133 21545 - TRAM | tRNA_U5-meth_tr | Methyltransf_31
TC Rep_547_c_5 Rep_547_c_5_21 21561 24128 - 3.A.9.1.2
pfam Rep_547_c_5 Rep_547_c_5_22 24486 27047 + DNA_topoisoIV | DNA_gyraseA_C | DNA_gyraseA_C | DNA_gyraseA_C | DNA_gyraseA_C | DNA_gyraseA_C | DNA_gyraseA_C
pfam Rep_547_c_5 Rep_547_c_5_23 27097 28323 + TPR_8 | TPR_16
CAZyme Rep_547_c_5 Rep_547_c_5_24 28900 31146 - GH92
CAZyme Rep_547_c_5 Rep_547_c_5_25 31252 33432 - GH20
TC Rep_547_c_5 Rep_547_c_5_26 33504 34874 - 2.A.66.1.32
NULL(UNKNOWN) Rep_547_c_5 Rep_547_c_5_27 35049 35186 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_547_c_5 Rep_547_c_5_28 35167 35850 + 2.A.88.8.1
TC Rep_547_c_5 Rep_547_c_5_29 35897 37219 + 2.A.66.1.45
Gene ID: Rep_547_c_5_19
Type: CAZyme
Location: 18729 - 20126 (-)
Gene ID: Rep_547_c_5_20
Type: pfam
Location: 20133 - 21545 (-)
Gene ID: Rep_547_c_5_21
Type: TC
Location: 21561 - 24128 (-)
Gene ID: Rep_547_c_5_22
Type: pfam
Location: 24486 - 27047 (+)
Gene ID: Rep_547_c_5_23
Type: pfam
Location: 27097 - 28323 (+)
Gene ID: Rep_547_c_5_24
Type: CAZyme
Location: 28900 - 31146 (-)
Gene ID: Rep_547_c_5_25
Type: CAZyme
Location: 31252 - 33432 (-)
Gene ID: Rep_547_c_5_26
Type: TC
Location: 33504 - 34874 (-)
Gene ID: Rep_547_c_5_27
Type:
Location: 35049 - 35186 (+)
Gene ID: Rep_547_c_5_28
Type: TC
Location: 35167 - 35850 (+)
Gene ID: Rep_547_c_5_29
Type: TC
Location: 35897 - 37219 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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