Cluster: Rep_547_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_547
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_547_c_30 | Rep_547_c_30_7 | 10429 | 12780 | + | GH92 |
| CAZyme | Rep_547_c_30 | Rep_547_c_30_8 | 12879 | 15779 | + | GH38 |
| STP | Rep_547_c_30 | Rep_547_c_30_9 | 15873 | 16460 | - | Sigma70_r2 | Sigma70_r4_2 |
| STP | Rep_547_c_30 | Rep_547_c_30_10 | 17049 | 18053 | + | FecR |
| TC | Rep_547_c_30 | Rep_547_c_30_11 | 18214 | 21819 | + | 1.B.14.6.1 |
Gene ID: Rep_547_c_30_7
Type: CAZyme
Location: 10429 - 12780 (+)
Type: CAZyme
Location: 10429 - 12780 (+)
Gene ID: Rep_547_c_30_8
Type: CAZyme
Location: 12879 - 15779 (+)
Type: CAZyme
Location: 12879 - 15779 (+)
Gene ID: Rep_547_c_30_9
Type: STP
Location: 15873 - 16460 (-)
Type: STP
Location: 15873 - 16460 (-)
Gene ID: Rep_547_c_30_10
Type: STP
Location: 17049 - 18053 (+)
Type: STP
Location: 17049 - 18053 (+)
Gene ID: Rep_547_c_30_11
Type: TC
Location: 18214 - 21819 (+)
Type: TC
Location: 18214 - 21819 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.