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Cluster: Rep_547_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_547_c_1 Rep_547_c_1_11 20704 23058 - 1.B.14.3.6
NULL(UNKNOWN) Rep_547_c_1 Rep_547_c_1_12 23504 24253 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_547_c_1 Rep_547_c_1_13 24259 24981 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_547_c_1 Rep_547_c_1_14 24978 25520 - 3.A.1.124.6
pfam Rep_547_c_1 Rep_547_c_1_15 25832 26908 - GldN
TC Rep_547_c_1 Rep_547_c_1_16 26919 28487 - 9.A.25.1.1
pfam Rep_547_c_1 Rep_547_c_1_17 28533 29579 - GldL_N
TC Rep_547_c_1 Rep_547_c_1_18 29619 31049 - 9.A.25.1.1
pfam Rep_547_c_1 Rep_547_c_1_19 31054 32007 - PorP_SprF
NULL(UNKNOWN) Rep_547_c_1 Rep_547_c_1_20 32044 32220 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_547_c_1 Rep_547_c_1_21 32316 34523 - GH3
Gene ID: Rep_547_c_1_11
Type: TC
Location: 20704 - 23058 (-)
Gene ID: Rep_547_c_1_12
Type:
Location: 23504 - 24253 (-)
Gene ID: Rep_547_c_1_13
Type:
Location: 24259 - 24981 (-)
Gene ID: Rep_547_c_1_14
Type: TC
Location: 24978 - 25520 (-)
Gene ID: Rep_547_c_1_15
Type: pfam
Location: 25832 - 26908 (-)
Gene ID: Rep_547_c_1_16
Type: TC
Location: 26919 - 28487 (-)
Gene ID: Rep_547_c_1_17
Type: pfam
Location: 28533 - 29579 (-)
Gene ID: Rep_547_c_1_18
Type: TC
Location: 29619 - 31049 (-)
Gene ID: Rep_547_c_1_19
Type: pfam
Location: 31054 - 32007 (-)
Gene ID: Rep_547_c_1_20
Type:
Location: 32044 - 32220 (-)
Gene ID: Rep_547_c_1_21
Type: CAZyme
Location: 32316 - 34523 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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