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Cluster: Rep_547_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_547_c_13 Rep_547_c_13_1 156 1268 + GT4
NULL(UNKNOWN) Rep_547_c_13 Rep_547_c_13_2 1285 2358 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_547_c_13 Rep_547_c_13_3 2362 3435 + 9.B.18.2.1
pfam Rep_547_c_13 Rep_547_c_13_4 3478 4626 + Epimerase | Polysacc_synt_2 | Polysacc_synt_C
pfam Rep_547_c_13 Rep_547_c_13_5 4801 5979 + Epimerase_2
CAZyme Rep_547_c_13 Rep_547_c_13_6 5995 7215 + GT4
pfam Rep_547_c_13 Rep_547_c_13_7 7190 7795 + Acetyltransf_1 | Acetyltransf_7
pfam Rep_547_c_13 Rep_547_c_13_8 7797 8996 + Aminotran_1_2 | DegT_DnrJ_EryC1
TC Rep_547_c_13 Rep_547_c_13_9 9008 9601 + 9.B.18.1.3
Gene ID: Rep_547_c_13_1
Type: CAZyme
Location: 156 - 1268 (+)
Gene ID: Rep_547_c_13_2
Type:
Location: 1285 - 2358 (+)
Gene ID: Rep_547_c_13_3
Type: TC
Location: 2362 - 3435 (+)
Gene ID: Rep_547_c_13_4
Type: pfam
Location: 3478 - 4626 (+)
Gene ID: Rep_547_c_13_5
Type: pfam
Location: 4801 - 5979 (+)
Gene ID: Rep_547_c_13_6
Type: CAZyme
Location: 5995 - 7215 (+)
Gene ID: Rep_547_c_13_7
Type: pfam
Location: 7190 - 7795 (+)
Gene ID: Rep_547_c_13_8
Type: pfam
Location: 7797 - 8996 (+)
Gene ID: Rep_547_c_13_9
Type: TC
Location: 9008 - 9601 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_547_c_13_3 vegetarian > omnivore 1.27808 0.00364
Rep_547_c_13_3 vegetarian > vegan 1.93251 0.00566

🧭 Explore Read Mapping of CGC

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