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Cluster: Rep_547_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_547_c_0 Rep_547_c_0_66 55970 58903 - GH106
pfam Rep_547_c_0 Rep_547_c_0_67 58932 60356 - Arabinose_Iso_C
TF Rep_547_c_0 Rep_547_c_0_68 60514 61404 + HTH_AraC
TC Rep_547_c_0 Rep_547_c_0_69 61474 63054 - 8.A.46.1.1
TC Rep_547_c_0 Rep_547_c_0_70 63069 66038 - 1.B.14.6.1
pfam Rep_547_c_0 Rep_547_c_0_71 66377 67048 - Methyltransf_30
TF Rep_547_c_0 Rep_547_c_0_72 67163 68071 - HTH_AraC
TC Rep_547_c_0 Rep_547_c_0_73 68288 69109 + 2.A.6.2.39
TC Rep_547_c_0 Rep_547_c_0_74 69117 72227 + 2.A.6.2.17
Gene ID: Rep_547_c_0_66
Type: CAZyme
Location: 55970 - 58903 (-)
Gene ID: Rep_547_c_0_67
Type: pfam
Location: 58932 - 60356 (-)
Gene ID: Rep_547_c_0_68
Type: TF
Location: 60514 - 61404 (+)
Gene ID: Rep_547_c_0_69
Type: TC
Location: 61474 - 63054 (-)
Gene ID: Rep_547_c_0_70
Type: TC
Location: 63069 - 66038 (-)
Gene ID: Rep_547_c_0_71
Type: pfam
Location: 66377 - 67048 (-)
Gene ID: Rep_547_c_0_72
Type: TF
Location: 67163 - 68071 (-)
Gene ID: Rep_547_c_0_73
Type: TC
Location: 68288 - 69109 (+)
Gene ID: Rep_547_c_0_74
Type: TC
Location: 69117 - 72227 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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