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Cluster: Rep_541_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_541_c_34 Rep_541_c_34_4 1602 2180 - 3.D.6.1.2
TC Rep_541_c_34 Rep_541_c_34_5 2216 2779 - 3.D.6.1.2
TC Rep_541_c_34 Rep_541_c_34_6 2817 3446 - 3.D.6.1.2
TC Rep_541_c_34 Rep_541_c_34_7 3473 4465 - 3.D.6.1.2
TC Rep_541_c_34 Rep_541_c_34_8 4493 5830 - 3.D.6.1.2
TC Rep_541_c_34 Rep_541_c_34_9 5868 6773 - 3.D.6.1.2
pfam Rep_541_c_34 Rep_541_c_34_10 6808 7200 - RseC_MucC
TC Rep_541_c_34 Rep_541_c_34_11 7434 9044 - 9.B.168.1.2
peptidase Rep_541_c_34 Rep_541_c_34_12 9209 10846 + C26.964
TC Rep_541_c_34 Rep_541_c_34_13 10880 12730 + 2.A.9.3.1
pfam Rep_541_c_34 Rep_541_c_34_14 13015 13842 + Patatin
CAZyme Rep_541_c_34 Rep_541_c_34_15 13863 15563 + GH13_38
Gene ID: Rep_541_c_34_4
Type: TC
Location: 1602 - 2180 (-)
Gene ID: Rep_541_c_34_5
Type: TC
Location: 2216 - 2779 (-)
Gene ID: Rep_541_c_34_6
Type: TC
Location: 2817 - 3446 (-)
Gene ID: Rep_541_c_34_7
Type: TC
Location: 3473 - 4465 (-)
Gene ID: Rep_541_c_34_8
Type: TC
Location: 4493 - 5830 (-)
Gene ID: Rep_541_c_34_9
Type: TC
Location: 5868 - 6773 (-)
Gene ID: Rep_541_c_34_10
Type: pfam
Location: 6808 - 7200 (-)
Gene ID: Rep_541_c_34_11
Type: TC
Location: 7434 - 9044 (-)
Gene ID: Rep_541_c_34_12
Type: peptidase
Location: 9209 - 10846 (+)
Gene ID: Rep_541_c_34_13
Type: TC
Location: 10880 - 12730 (+)
Gene ID: Rep_541_c_34_14
Type: pfam
Location: 13015 - 13842 (+)
Gene ID: Rep_541_c_34_15
Type: CAZyme
Location: 13863 - 15563 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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