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Cluster: Rep_541_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_541_c_15 Rep_541_c_15_15 22443 24080 + 3.A.1.121.4
CAZyme Rep_541_c_15 Rep_541_c_15_16 24217 27594 + GH2
pfam Rep_541_c_15 Rep_541_c_15_17 27764 28186 + DUF6769
TC Rep_541_c_15 Rep_541_c_15_18 28298 29503 + 2.A.6.1.7
TC Rep_541_c_15 Rep_541_c_15_19 29607 32765 + 2.A.6.1.7
pfam Rep_541_c_15 Rep_541_c_15_20 32762 33988 + OEP | OEP
pfam Rep_541_c_15 Rep_541_c_15_21 33983 35449 - Methyltr_RsmB-F | Methyltranf_PUA | Methyltr_RsmF_N
TC Rep_541_c_15 Rep_541_c_15_22 35686 37986 - 1.B.14.1.4
Gene ID: Rep_541_c_15_15
Type: TC
Location: 22443 - 24080 (+)
Gene ID: Rep_541_c_15_16
Type: CAZyme
Location: 24217 - 27594 (+)
Gene ID: Rep_541_c_15_17
Type: pfam
Location: 27764 - 28186 (+)
Gene ID: Rep_541_c_15_18
Type: TC
Location: 28298 - 29503 (+)
Gene ID: Rep_541_c_15_19
Type: TC
Location: 29607 - 32765 (+)
Gene ID: Rep_541_c_15_20
Type: pfam
Location: 32762 - 33988 (+)
Gene ID: Rep_541_c_15_21
Type: pfam
Location: 33983 - 35449 (-)
Gene ID: Rep_541_c_15_22
Type: TC
Location: 35686 - 37986 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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