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Cluster: Rep_541_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_541_c_14 Rep_541_c_14_44 50139 51143 + PL42
CAZyme Rep_541_c_14 Rep_541_c_14_45 51160 53469 + GH105 | GH154
TF Rep_541_c_14 Rep_541_c_14_46 53564 57634 - HTH_AraC
TC Rep_541_c_14 Rep_541_c_14_47 58452 61709 + 1.B.14.6.1
pfam Rep_541_c_14 Rep_541_c_14_48 61723 63753 + SusD_RagB | SusD-like_3
CAZyme Rep_541_c_14 Rep_541_c_14_49 63925 64824 + GH43_17
CAZyme Rep_541_c_14 Rep_541_c_14_50 64860 66002 + GH43_24
CAZyme Rep_541_c_14 Rep_541_c_14_51 66191 68110 + GH43_19 | GH43_34
CAZyme Rep_541_c_14 Rep_541_c_14_52 68118 70490 + GH35
Gene ID: Rep_541_c_14_44
Type: CAZyme
Location: 50139 - 51143 (+)
Gene ID: Rep_541_c_14_45
Type: CAZyme
Location: 51160 - 53469 (+)
Gene ID: Rep_541_c_14_46
Type: TF
Location: 53564 - 57634 (-)
Gene ID: Rep_541_c_14_47
Type: TC
Location: 58452 - 61709 (+)
Gene ID: Rep_541_c_14_48
Type: pfam
Location: 61723 - 63753 (+)
Gene ID: Rep_541_c_14_49
Type: CAZyme
Location: 63925 - 64824 (+)
Gene ID: Rep_541_c_14_50
Type: CAZyme
Location: 64860 - 66002 (+)
Gene ID: Rep_541_c_14_51
Type: CAZyme
Location: 66191 - 68110 (+)
Gene ID: Rep_541_c_14_52
Type: CAZyme
Location: 68118 - 70490 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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