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Cluster: Rep_541_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_541_c_0 Rep_541_c_0_133 171545 173710 - GH97
TC Rep_541_c_0 Rep_541_c_0_134 173995 174366 + 1.A.43.1.1
CAZyme Rep_541_c_0 Rep_541_c_0_135 174530 175693 + CE9
STP Rep_541_c_0 Rep_541_c_0_136 175727 177718 + PIG-L
TF Rep_541_c_0 Rep_541_c_0_137 177786 178673 - HTH_AraC | HTH_AraC
TC Rep_541_c_0 Rep_541_c_0_138 178832 180190 + 2.A.1.1.55
STP Rep_541_c_0 Rep_541_c_0_139 180433 183726 + TPR_1 | TPR_2
CAZyme Rep_541_c_0 Rep_541_c_0_140 183723 186530 + GH2
Gene ID: Rep_541_c_0_133
Type: CAZyme
Location: 171545 - 173710 (-)
Gene ID: Rep_541_c_0_134
Type: TC
Location: 173995 - 174366 (+)
Gene ID: Rep_541_c_0_135
Type: CAZyme
Location: 174530 - 175693 (+)
Gene ID: Rep_541_c_0_136
Type: STP
Location: 175727 - 177718 (+)
Gene ID: Rep_541_c_0_137
Type: TF
Location: 177786 - 178673 (-)
Gene ID: Rep_541_c_0_138
Type: TC
Location: 178832 - 180190 (+)
Gene ID: Rep_541_c_0_139
Type: STP
Location: 180433 - 183726 (+)
Gene ID: Rep_541_c_0_140
Type: CAZyme
Location: 183723 - 186530 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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