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Cluster: Rep_541_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_541_c_7 Rep_541_c_7_43 46894 47652 + 9.B.158.1.1
pfam Rep_541_c_7 Rep_541_c_7_44 47757 48110 - Asp_decarbox
pfam Rep_541_c_7 Rep_541_c_7_45 48129 48974 - Pantoate_ligase
CAZyme Rep_541_c_7 Rep_541_c_7_46 49219 50037 + GT5
pfam Rep_541_c_7 Rep_541_c_7_47 50077 51675 + DUF4270
CAZyme Rep_541_c_7 Rep_541_c_7_48 51761 53161 - GH57
CAZyme Rep_541_c_7 Rep_541_c_7_49 53179 54447 - GT4
CAZyme Rep_541_c_7 Rep_541_c_7_50 54444 56411 - GH133
TC Rep_541_c_7 Rep_541_c_7_51 56610 57314 + 9.B.104.3.2
TC Rep_541_c_7 Rep_541_c_7_52 57453 58964 + 2.A.38.1.1
TC Rep_541_c_7 Rep_541_c_7_53 58980 59576 - 2.A.95.1.4
Gene ID: Rep_541_c_7_43
Type: TC
Location: 46894 - 47652 (+)
Gene ID: Rep_541_c_7_44
Type: pfam
Location: 47757 - 48110 (-)
Gene ID: Rep_541_c_7_45
Type: pfam
Location: 48129 - 48974 (-)
Gene ID: Rep_541_c_7_46
Type: CAZyme
Location: 49219 - 50037 (+)
Gene ID: Rep_541_c_7_47
Type: pfam
Location: 50077 - 51675 (+)
Gene ID: Rep_541_c_7_48
Type: CAZyme
Location: 51761 - 53161 (-)
Gene ID: Rep_541_c_7_49
Type: CAZyme
Location: 53179 - 54447 (-)
Gene ID: Rep_541_c_7_50
Type: CAZyme
Location: 54444 - 56411 (-)
Gene ID: Rep_541_c_7_51
Type: TC
Location: 56610 - 57314 (+)
Gene ID: Rep_541_c_7_52
Type: TC
Location: 57453 - 58964 (+)
Gene ID: Rep_541_c_7_53
Type: TC
Location: 58980 - 59576 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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