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Cluster: Rep_541_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_541_c_5 Rep_541_c_5_32 39363 40205 - 1.A.23.2.1
pfam Rep_541_c_5 Rep_541_c_5_33 40401 41699 + Mur_ligase | Mur_ligase_C | Mur_ligase_M
pfam Rep_541_c_5 Rep_541_c_5_34 41694 42080 - VanZ
TC Rep_541_c_5 Rep_541_c_5_35 42184 43551 + 2.A.22.5.3
pfam Rep_541_c_5 Rep_541_c_5_36 43564 44520 + HHH_3 | HHH_3 | HHH_3
TC Rep_541_c_5 Rep_541_c_5_37 44921 45592 - 3.A.1.122.2
pfam Rep_541_c_5 Rep_541_c_5_38 45610 46320 - ThiF
TC Rep_541_c_5 Rep_541_c_5_39 46320 48452 - 2.A.37.2.5
pfam Rep_541_c_5 Rep_541_c_5_40 48754 49761 + Semialdhyde_dh | Semialdhyde_dhC
NULL(UNKNOWN) Rep_541_c_5 Rep_541_c_5_41 49898 50752 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_541_c_5 Rep_541_c_5_42 51175 54516 + 1.B.14.6.1
pfam Rep_541_c_5 Rep_541_c_5_43 54535 56256 + SusD_RagB | SusD-like_3
TC Rep_541_c_5 Rep_541_c_5_44 56670 60011 + 1.B.14.6.1
pfam Rep_541_c_5 Rep_541_c_5_45 60031 61929 + SusD_RagB | SusD-like_3
CAZyme Rep_541_c_5 Rep_541_c_5_46 62122 63294 + GH171
TC Rep_541_c_5 Rep_541_c_5_47 63402 64874 + 2.A.21.3.7
NULL(UNKNOWN) Rep_541_c_5 Rep_541_c_5_48 64889 67960 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_541_c_5 Rep_541_c_5_49 67965 69842 + Metallophos | PQQ | PQQ | PQQ | PQQ_2 | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4
CAZyme Rep_541_c_5 Rep_541_c_5_50 69869 71329 + GT2
Gene ID: Rep_541_c_5_32
Type: TC
Location: 39363 - 40205 (-)
Gene ID: Rep_541_c_5_33
Type: pfam
Location: 40401 - 41699 (+)
Gene ID: Rep_541_c_5_34
Type: pfam
Location: 41694 - 42080 (-)
Gene ID: Rep_541_c_5_35
Type: TC
Location: 42184 - 43551 (+)
Gene ID: Rep_541_c_5_36
Type: pfam
Location: 43564 - 44520 (+)
Gene ID: Rep_541_c_5_37
Type: TC
Location: 44921 - 45592 (-)
Gene ID: Rep_541_c_5_38
Type: pfam
Location: 45610 - 46320 (-)
Gene ID: Rep_541_c_5_39
Type: TC
Location: 46320 - 48452 (-)
Gene ID: Rep_541_c_5_40
Type: pfam
Location: 48754 - 49761 (+)
Gene ID: Rep_541_c_5_41
Type:
Location: 49898 - 50752 (+)
Gene ID: Rep_541_c_5_42
Type: TC
Location: 51175 - 54516 (+)
Gene ID: Rep_541_c_5_43
Type: pfam
Location: 54535 - 56256 (+)
Gene ID: Rep_541_c_5_44
Type: TC
Location: 56670 - 60011 (+)
Gene ID: Rep_541_c_5_45
Type: pfam
Location: 60031 - 61929 (+)
Gene ID: Rep_541_c_5_46
Type: CAZyme
Location: 62122 - 63294 (+)
Gene ID: Rep_541_c_5_47
Type: TC
Location: 63402 - 64874 (+)
Gene ID: Rep_541_c_5_48
Type:
Location: 64889 - 67960 (+)
Gene ID: Rep_541_c_5_49
Type: pfam
Location: 67965 - 69842 (+)
Gene ID: Rep_541_c_5_50
Type: CAZyme
Location: 69869 - 71329 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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