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Cluster: Rep_541_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_541_c_5 Rep_541_c_5_3 1734 2723 + GT2
pfam Rep_541_c_5 Rep_541_c_5_4 2826 3512 + RadC | UPF0758_N
NULL(UNKNOWN) Rep_541_c_5 Rep_541_c_5_5 3603 3830 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_541_c_5 Rep_541_c_5_6 3995 4360 + 1.B.14.6.2
TC Rep_541_c_5 Rep_541_c_5_7 4433 7024 + 1.B.14.6.1
pfam Rep_541_c_5 Rep_541_c_5_8 7050 8717 + SusD_RagB | SusD-like_3
CAZyme Rep_541_c_5 Rep_541_c_5_9 9070 11385 + GH92
NULL(UNKNOWN) Rep_541_c_5 Rep_541_c_5_10 11396 11938 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_541_c_5 Rep_541_c_5_11 12025 13284 - His_Phos_2
CAZyme Rep_541_c_5 Rep_541_c_5_12 13308 14717 - GH28
CAZyme Rep_541_c_5 Rep_541_c_5_13 14762 17080 - GH92
pfam Rep_541_c_5 Rep_541_c_5_14 17077 18162 - HGSNAT_cat
CAZyme Rep_541_c_5 Rep_541_c_5_15 18184 20349 - GH89
Gene ID: Rep_541_c_5_3
Type: CAZyme
Location: 1734 - 2723 (+)
Gene ID: Rep_541_c_5_4
Type: pfam
Location: 2826 - 3512 (+)
Gene ID: Rep_541_c_5_5
Type:
Location: 3603 - 3830 (+)
Gene ID: Rep_541_c_5_6
Type: TC
Location: 3995 - 4360 (+)
Gene ID: Rep_541_c_5_7
Type: TC
Location: 4433 - 7024 (+)
Gene ID: Rep_541_c_5_8
Type: pfam
Location: 7050 - 8717 (+)
Gene ID: Rep_541_c_5_9
Type: CAZyme
Location: 9070 - 11385 (+)
Gene ID: Rep_541_c_5_10
Type:
Location: 11396 - 11938 (+)
Gene ID: Rep_541_c_5_11
Type: pfam
Location: 12025 - 13284 (-)
Gene ID: Rep_541_c_5_12
Type: CAZyme
Location: 13308 - 14717 (-)
Gene ID: Rep_541_c_5_13
Type: CAZyme
Location: 14762 - 17080 (-)
Gene ID: Rep_541_c_5_14
Type: pfam
Location: 17077 - 18162 (-)
Gene ID: Rep_541_c_5_15
Type: CAZyme
Location: 18184 - 20349 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_541_c_5_3 vegetarian > omnivore 1.02850 0.00566
Rep_541_c_5_4 vegan > omnivore 1.05867 0.00566

🧭 Explore Read Mapping of CGC

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