Cluster: Rep_541_CGC14
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_541
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_541_c_4 | Rep_541_c_4_42 | 48327 | 49370 | - | 9.B.33.1.1 |
| pfam | Rep_541_c_4 | Rep_541_c_4_43 | 49380 | 50306 | - | HlyD_3 | HlyD_D23 |
| TC | Rep_541_c_4 | Rep_541_c_4_44 | 50353 | 54678 | - | 2.A.6.1.2 |
| NULL(UNKNOWN) | Rep_541_c_4 | Rep_541_c_4_45 | 54937 | 55515 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_541_c_4 | Rep_541_c_4_46 | 55508 | 56539 | + | 9.B.106.3.3 |
| TF | Rep_541_c_4 | Rep_541_c_4_47 | 56744 | 60679 | - | HTH_AraC |
| CAZyme | Rep_541_c_4 | Rep_541_c_4_48 | 60967 | 63651 | + | GH2 |
| TC | Rep_541_c_4 | Rep_541_c_4_49 | 63760 | 66966 | + | 1.B.14.6.1 |
| pfam | Rep_541_c_4 | Rep_541_c_4_50 | 66978 | 69029 | + | SusD_RagB | SusD-like_3 |
| sulfatase | Rep_541_c_4 | Rep_541_c_4_51 | 69293 | 70861 | + | S1_4 |
| CAZyme | Rep_541_c_4 | Rep_541_c_4_52 | 70886 | 71971 | + | GH18 |
| sulfatase | Rep_541_c_4 | Rep_541_c_4_53 | 72024 | 73586 | + | S1_16 |
| CAZyme | Rep_541_c_4 | Rep_541_c_4_54 | 73626 | 76187 | + | GH84 |
| CAZyme | Rep_541_c_4 | Rep_541_c_4_55 | 76345 | 78387 | + | GH20 |
| CAZyme | Rep_541_c_4 | Rep_541_c_4_56 | 78413 | 79903 | + | GH125 |
| CAZyme | Rep_541_c_4 | Rep_541_c_4_57 | 79935 | 82208 | + | GH92 |
| CAZyme | Rep_541_c_4 | Rep_541_c_4_58 | 82311 | 85916 | + | GH2 |
| TC | Rep_541_c_4 | Rep_541_c_4_59 | 85928 | 87235 | + | 2.A.13.1.3 |
| CAZyme | Rep_541_c_4 | Rep_541_c_4_60 | 87279 | 89762 | + | GH31_4 |
| CAZyme | Rep_541_c_4 | Rep_541_c_4_61 | 89780 | 92203 | + | GH95 |
Gene ID: Rep_541_c_4_42
Type: TC
Location: 48327 - 49370 (-)
Type: TC
Location: 48327 - 49370 (-)
Gene ID: Rep_541_c_4_43
Type: pfam
Location: 49380 - 50306 (-)
Type: pfam
Location: 49380 - 50306 (-)
Gene ID: Rep_541_c_4_44
Type: TC
Location: 50353 - 54678 (-)
Type: TC
Location: 50353 - 54678 (-)
Gene ID: Rep_541_c_4_45
Type:
Location: 54937 - 55515 (+)
Type:
Location: 54937 - 55515 (+)
Gene ID: Rep_541_c_4_46
Type: TC
Location: 55508 - 56539 (+)
Type: TC
Location: 55508 - 56539 (+)
Gene ID: Rep_541_c_4_47
Type: TF
Location: 56744 - 60679 (-)
Type: TF
Location: 56744 - 60679 (-)
Gene ID: Rep_541_c_4_48
Type: CAZyme
Location: 60967 - 63651 (+)
Type: CAZyme
Location: 60967 - 63651 (+)
Gene ID: Rep_541_c_4_49
Type: TC
Location: 63760 - 66966 (+)
Type: TC
Location: 63760 - 66966 (+)
Gene ID: Rep_541_c_4_50
Type: pfam
Location: 66978 - 69029 (+)
Type: pfam
Location: 66978 - 69029 (+)
Gene ID: Rep_541_c_4_51
Type: sulfatase
Location: 69293 - 70861 (+)
Type: sulfatase
Location: 69293 - 70861 (+)
Gene ID: Rep_541_c_4_52
Type: CAZyme
Location: 70886 - 71971 (+)
Type: CAZyme
Location: 70886 - 71971 (+)
Gene ID: Rep_541_c_4_53
Type: sulfatase
Location: 72024 - 73586 (+)
Type: sulfatase
Location: 72024 - 73586 (+)
Gene ID: Rep_541_c_4_54
Type: CAZyme
Location: 73626 - 76187 (+)
Type: CAZyme
Location: 73626 - 76187 (+)
Gene ID: Rep_541_c_4_55
Type: CAZyme
Location: 76345 - 78387 (+)
Type: CAZyme
Location: 76345 - 78387 (+)
Gene ID: Rep_541_c_4_56
Type: CAZyme
Location: 78413 - 79903 (+)
Type: CAZyme
Location: 78413 - 79903 (+)
Gene ID: Rep_541_c_4_57
Type: CAZyme
Location: 79935 - 82208 (+)
Type: CAZyme
Location: 79935 - 82208 (+)
Gene ID: Rep_541_c_4_58
Type: CAZyme
Location: 82311 - 85916 (+)
Type: CAZyme
Location: 82311 - 85916 (+)
Gene ID: Rep_541_c_4_59
Type: TC
Location: 85928 - 87235 (+)
Type: TC
Location: 85928 - 87235 (+)
Gene ID: Rep_541_c_4_60
Type: CAZyme
Location: 87279 - 89762 (+)
Type: CAZyme
Location: 87279 - 89762 (+)
Gene ID: Rep_541_c_4_61
Type: CAZyme
Location: 89780 - 92203 (+)
Type: CAZyme
Location: 89780 - 92203 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.