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Cluster: Rep_541_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_541_c_3 Rep_541_c_3_6 5349 6464 + 8.A.1.6.3
TC Rep_541_c_3 Rep_541_c_3_7 6486 9620 + 2.A.6.2.22
TC Rep_541_c_3 Rep_541_c_3_8 9652 11022 + 2.A.6.2.23
TC Rep_541_c_3 Rep_541_c_3_9 11432 12340 + 1.A.1.24.3
pfam Rep_541_c_3 Rep_541_c_3_10 12385 13155 + Patatin
CAZyme Rep_541_c_3 Rep_541_c_3_11 13278 14441 + CE9
TC Rep_541_c_3 Rep_541_c_3_12 14488 15162 + 9.B.186.1.3
CAZyme Rep_541_c_3 Rep_541_c_3_13 15261 16622 - GH105
sulfatase Rep_541_c_3 Rep_541_c_3_14 16858 17610 + S1_6
pfam Rep_541_c_3 Rep_541_c_3_15 17875 18312 + HSP20 | ArsA_HSP20
TC Rep_541_c_3 Rep_541_c_3_16 18390 19355 - 2.A.115.1.2
Gene ID: Rep_541_c_3_6
Type: TC
Location: 5349 - 6464 (+)
Gene ID: Rep_541_c_3_7
Type: TC
Location: 6486 - 9620 (+)
Gene ID: Rep_541_c_3_8
Type: TC
Location: 9652 - 11022 (+)
Gene ID: Rep_541_c_3_9
Type: TC
Location: 11432 - 12340 (+)
Gene ID: Rep_541_c_3_10
Type: pfam
Location: 12385 - 13155 (+)
Gene ID: Rep_541_c_3_11
Type: CAZyme
Location: 13278 - 14441 (+)
Gene ID: Rep_541_c_3_12
Type: TC
Location: 14488 - 15162 (+)
Gene ID: Rep_541_c_3_13
Type: CAZyme
Location: 15261 - 16622 (-)
Gene ID: Rep_541_c_3_14
Type: sulfatase
Location: 16858 - 17610 (+)
Gene ID: Rep_541_c_3_15
Type: pfam
Location: 17875 - 18312 (+)
Gene ID: Rep_541_c_3_16
Type: TC
Location: 18390 - 19355 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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