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Cluster: Rep_541_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_541_c_0 Rep_541_c_0_66 81572 82744 + GT2
STP Rep_541_c_0 Rep_541_c_0_67 82768 83304 + HD
TC Rep_541_c_0 Rep_541_c_0_68 83436 84764 - 2.A.115.2.14
TF Rep_541_c_0 Rep_541_c_0_69 84846 85814 + HTH_AraC
pfam Rep_541_c_0 Rep_541_c_0_70 85857 87149 - OEP | OEP
TC Rep_541_c_0 Rep_541_c_0_71 87188 90280 - 2.A.6.2.38
TC Rep_541_c_0 Rep_541_c_0_72 90297 91331 - 2.A.6.3.7
STP Rep_541_c_0 Rep_541_c_0_73 91534 92457 + HTH_18
TC Rep_541_c_0 Rep_541_c_0_74 92887 95274 + 1.B.14.3.6
Gene ID: Rep_541_c_0_66
Type: CAZyme
Location: 81572 - 82744 (+)
Gene ID: Rep_541_c_0_67
Type: STP
Location: 82768 - 83304 (+)
Gene ID: Rep_541_c_0_68
Type: TC
Location: 83436 - 84764 (-)
Gene ID: Rep_541_c_0_69
Type: TF
Location: 84846 - 85814 (+)
Gene ID: Rep_541_c_0_70
Type: pfam
Location: 85857 - 87149 (-)
Gene ID: Rep_541_c_0_71
Type: TC
Location: 87188 - 90280 (-)
Gene ID: Rep_541_c_0_72
Type: TC
Location: 90297 - 91331 (-)
Gene ID: Rep_541_c_0_73
Type: STP
Location: 91534 - 92457 (+)
Gene ID: Rep_541_c_0_74
Type: TC
Location: 92887 - 95274 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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