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Cluster: Rep_532_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_532_c_35 Rep_532_c_35_1 167 1537 - 2.A.66.1.33
NULL(UNKNOWN) Rep_532_c_35 Rep_532_c_35_2 1765 1869 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_532_c_35 Rep_532_c_35_3 1862 2839 - Fic | Virulence_RhuM
CAZyme Rep_532_c_35 Rep_532_c_35_4 3223 5451 - CBM67 | GH78
CAZyme Rep_532_c_35 Rep_532_c_35_5 5537 8332 - GH2
TF Rep_532_c_35 Rep_532_c_35_6 8531 9412 + HTH_AraC | HTH_AraC
pfam Rep_532_c_35 Rep_532_c_35_7 9381 12776 - TPR_8 | TPR_8 | TPR_16 | TPR_16 | DUF5107
TC Rep_532_c_35 Rep_532_c_35_8 12813 14198 - 2.A.1.1.3
Gene ID: Rep_532_c_35_1
Type: TC
Location: 167 - 1537 (-)
Gene ID: Rep_532_c_35_2
Type:
Location: 1765 - 1869 (-)
Gene ID: Rep_532_c_35_3
Type: pfam
Location: 1862 - 2839 (-)
Gene ID: Rep_532_c_35_4
Type: CAZyme
Location: 3223 - 5451 (-)
Gene ID: Rep_532_c_35_5
Type: CAZyme
Location: 5537 - 8332 (-)
Gene ID: Rep_532_c_35_6
Type: TF
Location: 8531 - 9412 (+)
Gene ID: Rep_532_c_35_7
Type: pfam
Location: 9381 - 12776 (-)
Gene ID: Rep_532_c_35_8
Type: TC
Location: 12813 - 14198 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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