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Cluster: Rep_532_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_532_c_9 Rep_532_c_9_1 401 1240 + 3.A.1.132.6
NULL(UNKNOWN) Rep_532_c_9 Rep_532_c_9_2 1254 2135 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_532_c_9 Rep_532_c_9_3 2132 2509 + GntR
CAZyme Rep_532_c_9 Rep_532_c_9_4 2740 3960 - GT30
pfam Rep_532_c_9 Rep_532_c_9_5 3969 5486 - tRNA-synt_1c | Anticodon_2
STP Rep_532_c_9 Rep_532_c_9_6 5572 7629 + HD
CAZyme Rep_532_c_9 Rep_532_c_9_7 7720 10584 - GH2
TC Rep_532_c_9 Rep_532_c_9_8 10687 12147 - 2.A.1.14.25
pfam Rep_532_c_9 Rep_532_c_9_9 12349 13248 - KduI
TC Rep_532_c_9 Rep_532_c_9_10 13293 14684 - 4.A.5.1.4
Gene ID: Rep_532_c_9_1
Type: TC
Location: 401 - 1240 (+)
Gene ID: Rep_532_c_9_2
Type:
Location: 1254 - 2135 (+)
Gene ID: Rep_532_c_9_3
Type: TF
Location: 2132 - 2509 (+)
Gene ID: Rep_532_c_9_4
Type: CAZyme
Location: 2740 - 3960 (-)
Gene ID: Rep_532_c_9_5
Type: pfam
Location: 3969 - 5486 (-)
Gene ID: Rep_532_c_9_6
Type: STP
Location: 5572 - 7629 (+)
Gene ID: Rep_532_c_9_7
Type: CAZyme
Location: 7720 - 10584 (-)
Gene ID: Rep_532_c_9_8
Type: TC
Location: 10687 - 12147 (-)
Gene ID: Rep_532_c_9_9
Type: pfam
Location: 12349 - 13248 (-)
Gene ID: Rep_532_c_9_10
Type: TC
Location: 13293 - 14684 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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