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Cluster: Rep_532_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_532_c_5 Rep_532_c_5_4 1188 2372 + 2.A.1.2.14
TF Rep_532_c_5 Rep_532_c_5_5 2384 6532 + HTH_AraC
CAZyme Rep_532_c_5 Rep_532_c_5_6 6642 8042 - GH28
CAZyme Rep_532_c_5 Rep_532_c_5_7 8069 10396 - GH92
pfam Rep_532_c_5 Rep_532_c_5_8 10600 12267 - SusD_RagB | SusD-like_3
TC Rep_532_c_5 Rep_532_c_5_9 12293 15307 - 1.B.14.6.1
NULL(UNKNOWN) Rep_532_c_5 Rep_532_c_5_10 15341 16408 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_532_c_5 Rep_532_c_5_11 16446 18611 - GH89
TC Rep_532_c_5 Rep_532_c_5_12 18788 20137 + 2.A.66.1.45
Gene ID: Rep_532_c_5_4
Type: TC
Location: 1188 - 2372 (+)
Gene ID: Rep_532_c_5_5
Type: TF
Location: 2384 - 6532 (+)
Gene ID: Rep_532_c_5_6
Type: CAZyme
Location: 6642 - 8042 (-)
Gene ID: Rep_532_c_5_7
Type: CAZyme
Location: 8069 - 10396 (-)
Gene ID: Rep_532_c_5_8
Type: pfam
Location: 10600 - 12267 (-)
Gene ID: Rep_532_c_5_9
Type: TC
Location: 12293 - 15307 (-)
Gene ID: Rep_532_c_5_10
Type:
Location: 15341 - 16408 (-)
Gene ID: Rep_532_c_5_11
Type: CAZyme
Location: 16446 - 18611 (-)
Gene ID: Rep_532_c_5_12
Type: TC
Location: 18788 - 20137 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_532_c_5_10 vegetarian > vegan 4.96070 0.04105

🧭 Explore Read Mapping of CGC

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