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Cluster: Rep_529_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_529_c_50 Rep_529_c_50_1 3 476 - 3.A.23.1.1
TC Rep_529_c_50 Rep_529_c_50_2 541 3180 - 1.B.14.6.14
pfam Rep_529_c_50 Rep_529_c_50_3 3394 4701 - Inos-1-P_synth | NAD_binding_5
STP Rep_529_c_50 Rep_529_c_50_4 4946 5851 + PfkB
TC Rep_529_c_50 Rep_529_c_50_5 5936 6706 - 3.A.1.7.2
TC Rep_529_c_50 Rep_529_c_50_6 6694 7563 - 3.A.1.7.1
TC Rep_529_c_50 Rep_529_c_50_7 7584 8441 - 3.A.1.7.1
TC Rep_529_c_50 Rep_529_c_50_8 8461 9519 - 3.A.1.7.1
NULL(UNKNOWN) Rep_529_c_50 Rep_529_c_50_9 9572 10567 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_529_c_50 Rep_529_c_50_10 10809 12347 - GH51_1
pfam Rep_529_c_50 Rep_529_c_50_11 12511 13536 + YceG
pfam Rep_529_c_50 Rep_529_c_50_12 13542 14231 - TrkA_N
TC Rep_529_c_50 Rep_529_c_50_13 14235 16064 - 2.A.38.4.2
Gene ID: Rep_529_c_50_1
Type: TC
Location: 3 - 476 (-)
Gene ID: Rep_529_c_50_2
Type: TC
Location: 541 - 3180 (-)
Gene ID: Rep_529_c_50_3
Type: pfam
Location: 3394 - 4701 (-)
Gene ID: Rep_529_c_50_4
Type: STP
Location: 4946 - 5851 (+)
Gene ID: Rep_529_c_50_5
Type: TC
Location: 5936 - 6706 (-)
Gene ID: Rep_529_c_50_6
Type: TC
Location: 6694 - 7563 (-)
Gene ID: Rep_529_c_50_7
Type: TC
Location: 7584 - 8441 (-)
Gene ID: Rep_529_c_50_8
Type: TC
Location: 8461 - 9519 (-)
Gene ID: Rep_529_c_50_9
Type:
Location: 9572 - 10567 (-)
Gene ID: Rep_529_c_50_10
Type: CAZyme
Location: 10809 - 12347 (-)
Gene ID: Rep_529_c_50_11
Type: pfam
Location: 12511 - 13536 (+)
Gene ID: Rep_529_c_50_12
Type: pfam
Location: 13542 - 14231 (-)
Gene ID: Rep_529_c_50_13
Type: TC
Location: 14235 - 16064 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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