Cluster: Rep_529_CGC52
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_529
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_529_c_43 | Rep_529_c_43_7 | 6799 | 8049 | - | 2.A.1.7.1 |
| pfam | Rep_529_c_43 | Rep_529_c_43_8 | 8067 | 9005 | - | Amidohydro_2 |
| TC | Rep_529_c_43 | Rep_529_c_43_9 | 9005 | 9937 | - | 8.A.5.1.6 |
| pfam | Rep_529_c_43 | Rep_529_c_43_10 | 9949 | 10329 | - | rhaM |
| CAZyme | Rep_529_c_43 | Rep_529_c_43_11 | 10334 | 11980 | - | GH29 |
| TF | Rep_529_c_43 | Rep_529_c_43_12 | 12186 | 13040 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_529_c_43 | Rep_529_c_43_13 | 13052 | 14944 | - | GH97 |
Gene ID: Rep_529_c_43_7
Type: TC
Location: 6799 - 8049 (-)
Type: TC
Location: 6799 - 8049 (-)
Gene ID: Rep_529_c_43_8
Type: pfam
Location: 8067 - 9005 (-)
Type: pfam
Location: 8067 - 9005 (-)
Gene ID: Rep_529_c_43_9
Type: TC
Location: 9005 - 9937 (-)
Type: TC
Location: 9005 - 9937 (-)
Gene ID: Rep_529_c_43_10
Type: pfam
Location: 9949 - 10329 (-)
Type: pfam
Location: 9949 - 10329 (-)
Gene ID: Rep_529_c_43_11
Type: CAZyme
Location: 10334 - 11980 (-)
Type: CAZyme
Location: 10334 - 11980 (-)
Gene ID: Rep_529_c_43_12
Type: TF
Location: 12186 - 13040 (+)
Type: TF
Location: 12186 - 13040 (+)
Gene ID: Rep_529_c_43_13
Type: CAZyme
Location: 13052 - 14944 (-)
Type: CAZyme
Location: 13052 - 14944 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902472605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_529_c_43_7 | vegetarian > vegan | 1.37871 | 0.03596 |