Cluster: Rep_529_CGC42
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_529
- CGC Family ID: CGCFAM_01113
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_529_c_29 | Rep_529_c_29_4 | 3987 | 4688 | + | 1.A.14.2.2 |
| STP | Rep_529_c_29 | Rep_529_c_29_5 | 4775 | 5968 | + | Aminotran_1_2 |
| NULL(UNKNOWN) | Rep_529_c_29 | Rep_529_c_29_6 | 5992 | 6201 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_529_c_29 | Rep_529_c_29_7 | 6565 | 9534 | - | GH3 |
Gene ID: Rep_529_c_29_4
Type: TC
Location: 3987 - 4688 (+)
Type: TC
Location: 3987 - 4688 (+)
Gene ID: Rep_529_c_29_5
Type: STP
Location: 4775 - 5968 (+)
Type: STP
Location: 4775 - 5968 (+)
Gene ID: Rep_529_c_29_6
Type:
Location: 5992 - 6201 (+)
Type:
Location: 5992 - 6201 (+)
Gene ID: Rep_529_c_29_7
Type: CAZyme
Location: 6565 - 9534 (-)
Type: CAZyme
Location: 6565 - 9534 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902472605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.