Cluster: Rep_529_CGC33
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_529
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_529_c_18 | Rep_529_c_18_8 | 8540 | 9490 | + | GT2 |
| pfam | Rep_529_c_18 | Rep_529_c_18_9 | 9493 | 9993 | + | DUF6452 |
| pfam | Rep_529_c_18 | Rep_529_c_18_10 | 9986 | 10687 | + | DUF6048 |
| TC | Rep_529_c_18 | Rep_529_c_18_11 | 10693 | 11265 | + | 2.A.107.1.2 |
| pfam | Rep_529_c_18 | Rep_529_c_18_12 | 11269 | 12282 | + | ApbE |
| TC | Rep_529_c_18 | Rep_529_c_18_13 | 12377 | 13282 | - | 2.A.7.3.57 |
Gene ID: Rep_529_c_18_8
Type: CAZyme
Location: 8540 - 9490 (+)
Type: CAZyme
Location: 8540 - 9490 (+)
Gene ID: Rep_529_c_18_9
Type: pfam
Location: 9493 - 9993 (+)
Type: pfam
Location: 9493 - 9993 (+)
Gene ID: Rep_529_c_18_10
Type: pfam
Location: 9986 - 10687 (+)
Type: pfam
Location: 9986 - 10687 (+)
Gene ID: Rep_529_c_18_11
Type: TC
Location: 10693 - 11265 (+)
Type: TC
Location: 10693 - 11265 (+)
Gene ID: Rep_529_c_18_12
Type: pfam
Location: 11269 - 12282 (+)
Type: pfam
Location: 11269 - 12282 (+)
Gene ID: Rep_529_c_18_13
Type: TC
Location: 12377 - 13282 (-)
Type: TC
Location: 12377 - 13282 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902472605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.