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Cluster: Rep_529_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_529_c_16 Rep_529_c_16_24 29734 30351 - 3.A.8.1.1
TC Rep_529_c_16 Rep_529_c_16_25 30628 34968 + 2.A.6.1.5
pfam Rep_529_c_16 Rep_529_c_16_26 34989 35906 + HlyD_3 | HlyD_D23
TC Rep_529_c_16 Rep_529_c_16_27 35916 36959 + 9.B.33.1.1
TF Rep_529_c_16 Rep_529_c_16_28 36961 37719 + LytTR
TC Rep_529_c_16 Rep_529_c_16_29 37815 39434 + 3.A.1.121.4
pfam Rep_529_c_16 Rep_529_c_16_30 39593 40075 - dCMP_cyt_deam_1 | dCMP_cyt_deam_2
CAZyme Rep_529_c_16 Rep_529_c_16_31 40218 41108 + GH73
Gene ID: Rep_529_c_16_24
Type: TC
Location: 29734 - 30351 (-)
Gene ID: Rep_529_c_16_25
Type: TC
Location: 30628 - 34968 (+)
Gene ID: Rep_529_c_16_26
Type: pfam
Location: 34989 - 35906 (+)
Gene ID: Rep_529_c_16_27
Type: TC
Location: 35916 - 36959 (+)
Gene ID: Rep_529_c_16_28
Type: TF
Location: 36961 - 37719 (+)
Gene ID: Rep_529_c_16_29
Type: TC
Location: 37815 - 39434 (+)
Gene ID: Rep_529_c_16_30
Type: pfam
Location: 39593 - 40075 (-)
Gene ID: Rep_529_c_16_31
Type: CAZyme
Location: 40218 - 41108 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_529_c_16_27 vegetarian > vegan 1.30699 0.03936

🧭 Explore Read Mapping of CGC

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