Cluster: Rep_529_CGC3
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_529
- CGC Family ID: CGCFAM_01743
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_529_c_0 | Rep_529_c_0_33 | 37685 | 40957 | - | 1.B.14.6.1 |
| CAZyme | Rep_529_c_0 | Rep_529_c_0_34 | 41158 | 42456 | - | GH5_7 |
| TF | Rep_529_c_0 | Rep_529_c_0_35 | 42655 | 43545 | - | HTH_AraC |
| CAZyme | Rep_529_c_0 | Rep_529_c_0_36 | 43771 | 45195 | - | CE20 |
| CAZyme | Rep_529_c_0 | Rep_529_c_0_37 | 45221 | 46330 | - | CE2 |
| pfam | Rep_529_c_0 | Rep_529_c_0_38 | 46698 | 47471 | + | Shikimate_DH | ApbA | NAD_binding_2 | F420_oxidored | P5CR_dimer |
| NULL(UNKNOWN) | Rep_529_c_0 | Rep_529_c_0_39 | 47529 | 47756 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_529_c_0 | Rep_529_c_0_40 | 47759 | 49108 | - | 2.A.66.1.45 |
| CAZyme | Rep_529_c_0 | Rep_529_c_0_41 | 49285 | 51450 | + | GH89 |
| pfam | Rep_529_c_0 | Rep_529_c_0_42 | 51486 | 52553 | + | HGSNAT_cat |
| TC | Rep_529_c_0 | Rep_529_c_0_43 | 52587 | 55580 | + | 1.B.14.6.1 |
| pfam | Rep_529_c_0 | Rep_529_c_0_44 | 55605 | 57263 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_529_c_0 | Rep_529_c_0_45 | 57461 | 59791 | + | GH92 |
| CAZyme | Rep_529_c_0 | Rep_529_c_0_46 | 59813 | 61213 | + | GH28 |
| TF | Rep_529_c_0 | Rep_529_c_0_47 | 61318 | 63558 | - | HTH_AraC |
| STP | Rep_529_c_0 | Rep_529_c_0_48 | 63561 | 65471 | - | Reg_prop |
| TC | Rep_529_c_0 | Rep_529_c_0_49 | 65498 | 66667 | - | 2.A.1.2.14 |
Gene ID: Rep_529_c_0_33
Type: TC
Location: 37685 - 40957 (-)
Type: TC
Location: 37685 - 40957 (-)
Gene ID: Rep_529_c_0_34
Type: CAZyme
Location: 41158 - 42456 (-)
Type: CAZyme
Location: 41158 - 42456 (-)
Gene ID: Rep_529_c_0_35
Type: TF
Location: 42655 - 43545 (-)
Type: TF
Location: 42655 - 43545 (-)
Gene ID: Rep_529_c_0_36
Type: CAZyme
Location: 43771 - 45195 (-)
Type: CAZyme
Location: 43771 - 45195 (-)
Gene ID: Rep_529_c_0_37
Type: CAZyme
Location: 45221 - 46330 (-)
Type: CAZyme
Location: 45221 - 46330 (-)
Gene ID: Rep_529_c_0_38
Type: pfam
Location: 46698 - 47471 (+)
Type: pfam
Location: 46698 - 47471 (+)
Gene ID: Rep_529_c_0_39
Type:
Location: 47529 - 47756 (+)
Type:
Location: 47529 - 47756 (+)
Gene ID: Rep_529_c_0_40
Type: TC
Location: 47759 - 49108 (-)
Type: TC
Location: 47759 - 49108 (-)
Gene ID: Rep_529_c_0_41
Type: CAZyme
Location: 49285 - 51450 (+)
Type: CAZyme
Location: 49285 - 51450 (+)
Gene ID: Rep_529_c_0_42
Type: pfam
Location: 51486 - 52553 (+)
Type: pfam
Location: 51486 - 52553 (+)
Gene ID: Rep_529_c_0_43
Type: TC
Location: 52587 - 55580 (+)
Type: TC
Location: 52587 - 55580 (+)
Gene ID: Rep_529_c_0_44
Type: pfam
Location: 55605 - 57263 (+)
Type: pfam
Location: 55605 - 57263 (+)
Gene ID: Rep_529_c_0_45
Type: CAZyme
Location: 57461 - 59791 (+)
Type: CAZyme
Location: 57461 - 59791 (+)
Gene ID: Rep_529_c_0_46
Type: CAZyme
Location: 59813 - 61213 (+)
Type: CAZyme
Location: 59813 - 61213 (+)
Gene ID: Rep_529_c_0_47
Type: TF
Location: 61318 - 63558 (-)
Type: TF
Location: 61318 - 63558 (-)
Gene ID: Rep_529_c_0_48
Type: STP
Location: 63561 - 65471 (-)
Type: STP
Location: 63561 - 65471 (-)
Gene ID: Rep_529_c_0_49
Type: TC
Location: 65498 - 66667 (-)
Type: TC
Location: 65498 - 66667 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902472605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_529_c_0_42 | vegetarian > vegan | 4.71822 | 0.02517 |