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Cluster: Rep_529_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_529_c_12 Rep_529_c_12_1 492 1331 + 3.A.1.132.6
NULL(UNKNOWN) Rep_529_c_12 Rep_529_c_12_2 1345 2214 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_529_c_12 Rep_529_c_12_3 2211 2588 + GntR
CAZyme Rep_529_c_12 Rep_529_c_12_4 2826 4046 - GT30
pfam Rep_529_c_12 Rep_529_c_12_5 4055 5572 - tRNA-synt_1c | Anticodon_2
STP Rep_529_c_12 Rep_529_c_12_6 5658 7715 + HD
TC Rep_529_c_12 Rep_529_c_12_7 7791 9248 - 2.A.1.14.25
pfam Rep_529_c_12 Rep_529_c_12_8 9394 10314 - KduI
TC Rep_529_c_12 Rep_529_c_12_9 10333 11724 - 4.A.5.1.2
Gene ID: Rep_529_c_12_1
Type: TC
Location: 492 - 1331 (+)
Gene ID: Rep_529_c_12_2
Type:
Location: 1345 - 2214 (+)
Gene ID: Rep_529_c_12_3
Type: TF
Location: 2211 - 2588 (+)
Gene ID: Rep_529_c_12_4
Type: CAZyme
Location: 2826 - 4046 (-)
Gene ID: Rep_529_c_12_5
Type: pfam
Location: 4055 - 5572 (-)
Gene ID: Rep_529_c_12_6
Type: STP
Location: 5658 - 7715 (+)
Gene ID: Rep_529_c_12_7
Type: TC
Location: 7791 - 9248 (-)
Gene ID: Rep_529_c_12_8
Type: pfam
Location: 9394 - 10314 (-)
Gene ID: Rep_529_c_12_9
Type: TC
Location: 10333 - 11724 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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