dbCAN Logo

Cluster: Rep_529_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_529_c_8 Rep_529_c_8_1 166 2490 - GH20
TF Rep_529_c_8 Rep_529_c_8_2 2857 6825 + HTH_AraC
NULL(UNKNOWN) Rep_529_c_8 Rep_529_c_8_3 7081 7272 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_529_c_8 Rep_529_c_8_4 7794 10928 + 1.B.14.6.1
pfam Rep_529_c_8 Rep_529_c_8_5 10935 12866 + SusD_RagB | SusD-like_3
TC Rep_529_c_8 Rep_529_c_8_6 12902 15724 + 1.B.14.6.2
pfam Rep_529_c_8 Rep_529_c_8_7 15743 17431 + SusD_RagB | SusD-like_3
pfam Rep_529_c_8 Rep_529_c_8_8 17450 18469 + TIG
CAZyme Rep_529_c_8 Rep_529_c_8_9 18490 20163 + GH5_4
CAZyme Rep_529_c_8 Rep_529_c_8_10 20175 23444 + GH3 | GH5_38
CAZyme Rep_529_c_8 Rep_529_c_8_11 23489 25858 + GH3
CAZyme Rep_529_c_8 Rep_529_c_8_12 25863 28445 + GH3
Gene ID: Rep_529_c_8_1
Type: CAZyme
Location: 166 - 2490 (-)
Gene ID: Rep_529_c_8_2
Type: TF
Location: 2857 - 6825 (+)
Gene ID: Rep_529_c_8_3
Type:
Location: 7081 - 7272 (-)
Gene ID: Rep_529_c_8_4
Type: TC
Location: 7794 - 10928 (+)
Gene ID: Rep_529_c_8_5
Type: pfam
Location: 10935 - 12866 (+)
Gene ID: Rep_529_c_8_6
Type: TC
Location: 12902 - 15724 (+)
Gene ID: Rep_529_c_8_7
Type: pfam
Location: 15743 - 17431 (+)
Gene ID: Rep_529_c_8_8
Type: pfam
Location: 17450 - 18469 (+)
Gene ID: Rep_529_c_8_9
Type: CAZyme
Location: 18490 - 20163 (+)
Gene ID: Rep_529_c_8_10
Type: CAZyme
Location: 20175 - 23444 (+)
Gene ID: Rep_529_c_8_11
Type: CAZyme
Location: 23489 - 25858 (+)
Gene ID: Rep_529_c_8_12
Type: CAZyme
Location: 25863 - 28445 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_529_c_8_1 vegan > omnivore 3.22666 0.01057

🧭 Explore Read Mapping of CGC

← Back to Cluster List