Cluster: Rep_529_CGC17
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 16
- Substrate: xylan
- Genome ID: Rep_529
- CGC Family ID: CGCFAM_00273
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_529_c_7 | Rep_529_c_7_1 | 178 | 2190 | - | GH67 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_2 | 2183 | 3160 | - | GH43_1 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_3 | 3210 | 4358 | - | GH10 |
| TC | Rep_529_c_7 | Rep_529_c_7_4 | 4378 | 5874 | - | 2.A.2.3.4 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_5 | 5877 | 7508 | - | CE20 | CE20 |
| TF | Rep_529_c_7 | Rep_529_c_7_6 | 7856 | 11932 | + | HTH_AraC |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_7 | 12059 | 12928 | - | CE6 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_8 | 12974 | 15589 | - | GH31_4 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_9 | 15673 | 17061 | - | CBM6 | GH43_29 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_10 | 17089 | 18420 | - | CBM6 | GH43_29 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_11 | 18460 | 20178 | - | GH43_29 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_12 | 20210 | 22171 | - | GH97 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_13 | 22196 | 24589 | - | GH146 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_14 | 24621 | 26228 | - | CBM91 | GH43_10 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_15 | 26263 | 28713 | - | GH95 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_16 | 28734 | 29603 | - | CE1 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_17 | 29944 | 31656 | + | CBM91 | GH43_12 |
| CAZyme | Rep_529_c_7 | Rep_529_c_7_18 | 31755 | 34256 | - | GH43_2 | GH8 |
| pfam | Rep_529_c_7 | Rep_529_c_7_19 | 34344 | 36143 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_529_c_7 | Rep_529_c_7_20 | 36189 | 39329 | - | 1.B.14.6.1 |
Gene ID: Rep_529_c_7_1
Type: CAZyme
Location: 178 - 2190 (-)
Type: CAZyme
Location: 178 - 2190 (-)
Gene ID: Rep_529_c_7_2
Type: CAZyme
Location: 2183 - 3160 (-)
Type: CAZyme
Location: 2183 - 3160 (-)
Gene ID: Rep_529_c_7_3
Type: CAZyme
Location: 3210 - 4358 (-)
Type: CAZyme
Location: 3210 - 4358 (-)
Gene ID: Rep_529_c_7_4
Type: TC
Location: 4378 - 5874 (-)
Type: TC
Location: 4378 - 5874 (-)
Gene ID: Rep_529_c_7_5
Type: CAZyme
Location: 5877 - 7508 (-)
Type: CAZyme
Location: 5877 - 7508 (-)
Gene ID: Rep_529_c_7_6
Type: TF
Location: 7856 - 11932 (+)
Type: TF
Location: 7856 - 11932 (+)
Gene ID: Rep_529_c_7_7
Type: CAZyme
Location: 12059 - 12928 (-)
Type: CAZyme
Location: 12059 - 12928 (-)
Gene ID: Rep_529_c_7_8
Type: CAZyme
Location: 12974 - 15589 (-)
Type: CAZyme
Location: 12974 - 15589 (-)
Gene ID: Rep_529_c_7_9
Type: CAZyme
Location: 15673 - 17061 (-)
Type: CAZyme
Location: 15673 - 17061 (-)
Gene ID: Rep_529_c_7_10
Type: CAZyme
Location: 17089 - 18420 (-)
Type: CAZyme
Location: 17089 - 18420 (-)
Gene ID: Rep_529_c_7_11
Type: CAZyme
Location: 18460 - 20178 (-)
Type: CAZyme
Location: 18460 - 20178 (-)
Gene ID: Rep_529_c_7_12
Type: CAZyme
Location: 20210 - 22171 (-)
Type: CAZyme
Location: 20210 - 22171 (-)
Gene ID: Rep_529_c_7_13
Type: CAZyme
Location: 22196 - 24589 (-)
Type: CAZyme
Location: 22196 - 24589 (-)
Gene ID: Rep_529_c_7_14
Type: CAZyme
Location: 24621 - 26228 (-)
Type: CAZyme
Location: 24621 - 26228 (-)
Gene ID: Rep_529_c_7_15
Type: CAZyme
Location: 26263 - 28713 (-)
Type: CAZyme
Location: 26263 - 28713 (-)
Gene ID: Rep_529_c_7_16
Type: CAZyme
Location: 28734 - 29603 (-)
Type: CAZyme
Location: 28734 - 29603 (-)
Gene ID: Rep_529_c_7_17
Type: CAZyme
Location: 29944 - 31656 (+)
Type: CAZyme
Location: 29944 - 31656 (+)
Gene ID: Rep_529_c_7_18
Type: CAZyme
Location: 31755 - 34256 (-)
Type: CAZyme
Location: 31755 - 34256 (-)
Gene ID: Rep_529_c_7_19
Type: pfam
Location: 34344 - 36143 (-)
Type: pfam
Location: 34344 - 36143 (-)
Gene ID: Rep_529_c_7_20
Type: TC
Location: 36189 - 39329 (-)
Type: TC
Location: 36189 - 39329 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902472605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.