Cluster: Rep_529_CGC11
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_529
- CGC Family ID: CGCFAM_01491
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_529_c_5 | Rep_529_c_5_1 | 2 | 1867 | - | GH97 |
| NULL(UNKNOWN) | Rep_529_c_5 | Rep_529_c_5_2 | 1845 | 2015 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_529_c_5 | Rep_529_c_5_3 | 2032 | 3039 | - | GH43_5 |
| pfam | Rep_529_c_5 | Rep_529_c_5_4 | 3226 | 3945 | - | DUF3823 | DUF3823_C |
| pfam | Rep_529_c_5 | Rep_529_c_5_5 | 3964 | 5823 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_529_c_5 | Rep_529_c_5_6 | 5837 | 8977 | - | 1.B.14.6.1 |
| TF | Rep_529_c_5 | Rep_529_c_5_7 | 9184 | 13380 | - | HTH_AraC |
| CAZyme | Rep_529_c_5 | Rep_529_c_5_8 | 13623 | 15602 | + | GH51_2 |
| NULL(UNKNOWN) | Rep_529_c_5 | Rep_529_c_5_9 | 15663 | 15776 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_529_c_5 | Rep_529_c_5_10 | 15950 | 16168 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_529_c_5 | Rep_529_c_5_11 | 16149 | 19496 | - | GH2 |
| CAZyme | Rep_529_c_5 | Rep_529_c_5_12 | 19668 | 21893 | - | GH92 |
| CAZyme | Rep_529_c_5 | Rep_529_c_5_13 | 21914 | 24196 | - | GH92 |
| CAZyme | Rep_529_c_5 | Rep_529_c_5_14 | 24224 | 26440 | - | GH92 |
Gene ID: Rep_529_c_5_1
Type: CAZyme
Location: 2 - 1867 (-)
Type: CAZyme
Location: 2 - 1867 (-)
Gene ID: Rep_529_c_5_2
Type:
Location: 1845 - 2015 (-)
Type:
Location: 1845 - 2015 (-)
Gene ID: Rep_529_c_5_3
Type: CAZyme
Location: 2032 - 3039 (-)
Type: CAZyme
Location: 2032 - 3039 (-)
Gene ID: Rep_529_c_5_4
Type: pfam
Location: 3226 - 3945 (-)
Type: pfam
Location: 3226 - 3945 (-)
Gene ID: Rep_529_c_5_5
Type: pfam
Location: 3964 - 5823 (-)
Type: pfam
Location: 3964 - 5823 (-)
Gene ID: Rep_529_c_5_6
Type: TC
Location: 5837 - 8977 (-)
Type: TC
Location: 5837 - 8977 (-)
Gene ID: Rep_529_c_5_7
Type: TF
Location: 9184 - 13380 (-)
Type: TF
Location: 9184 - 13380 (-)
Gene ID: Rep_529_c_5_8
Type: CAZyme
Location: 13623 - 15602 (+)
Type: CAZyme
Location: 13623 - 15602 (+)
Gene ID: Rep_529_c_5_9
Type:
Location: 15663 - 15776 (-)
Type:
Location: 15663 - 15776 (-)
Gene ID: Rep_529_c_5_10
Type:
Location: 15950 - 16168 (+)
Type:
Location: 15950 - 16168 (+)
Gene ID: Rep_529_c_5_11
Type: CAZyme
Location: 16149 - 19496 (-)
Type: CAZyme
Location: 16149 - 19496 (-)
Gene ID: Rep_529_c_5_12
Type: CAZyme
Location: 19668 - 21893 (-)
Type: CAZyme
Location: 19668 - 21893 (-)
Gene ID: Rep_529_c_5_13
Type: CAZyme
Location: 21914 - 24196 (-)
Type: CAZyme
Location: 21914 - 24196 (-)
Gene ID: Rep_529_c_5_14
Type: CAZyme
Location: 24224 - 26440 (-)
Type: CAZyme
Location: 24224 - 26440 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902472605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.