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Cluster: Rep_529_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_529_c_0 Rep_529_c_0_6 4725 5441 - 1.A.30.2.9
pfam Rep_529_c_0 Rep_529_c_0_7 5448 6161 - PdxJ
pfam Rep_529_c_0 Rep_529_c_0_8 6359 7246 + NAD_kinase | NAD_kinase_C
TC Rep_529_c_0 Rep_529_c_0_9 7309 8964 - 2.A.1.42.2
TF Rep_529_c_0 Rep_529_c_0_10 8985 9539 - HTH_3
NULL(UNKNOWN) Rep_529_c_0 Rep_529_c_0_11 9633 10022 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_529_c_0 Rep_529_c_0_12 10054 11190 + GH109
pfam Rep_529_c_0 Rep_529_c_0_13 11204 12298 - AA_kinase | PUA
pfam Rep_529_c_0 Rep_529_c_0_14 12706 13488 + S6PP | Hydrolase_3
TC Rep_529_c_0 Rep_529_c_0_15 13663 16086 + 1.B.14.1.4
Gene ID: Rep_529_c_0_6
Type: TC
Location: 4725 - 5441 (-)
Gene ID: Rep_529_c_0_7
Type: pfam
Location: 5448 - 6161 (-)
Gene ID: Rep_529_c_0_8
Type: pfam
Location: 6359 - 7246 (+)
Gene ID: Rep_529_c_0_9
Type: TC
Location: 7309 - 8964 (-)
Gene ID: Rep_529_c_0_10
Type: TF
Location: 8985 - 9539 (-)
Gene ID: Rep_529_c_0_11
Type:
Location: 9633 - 10022 (+)
Gene ID: Rep_529_c_0_12
Type: CAZyme
Location: 10054 - 11190 (+)
Gene ID: Rep_529_c_0_13
Type: pfam
Location: 11204 - 12298 (-)
Gene ID: Rep_529_c_0_14
Type: pfam
Location: 12706 - 13488 (+)
Gene ID: Rep_529_c_0_15
Type: TC
Location: 13663 - 16086 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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