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Cluster: Rep_527_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_527_c_0 Rep_527_c_0_527 608886 609854 + 3.D.6.1.3
TC Rep_527_c_0 Rep_527_c_0_528 609888 611225 + 3.D.6.1.2
TC Rep_527_c_0 Rep_527_c_0_529 611238 612227 + 3.D.6.1.2
TC Rep_527_c_0 Rep_527_c_0_530 612254 612880 + 3.D.6.1.2
TC Rep_527_c_0 Rep_527_c_0_531 612893 613477 + 3.D.6.1.2
TC Rep_527_c_0 Rep_527_c_0_532 613497 614099 + 3.D.6.1.2
pfam Rep_527_c_0 Rep_527_c_0_533 614275 615309 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
TC Rep_527_c_0 Rep_527_c_0_534 615764 617041 + 2.A.49.9.2
NULL(UNKNOWN) Rep_527_c_0 Rep_527_c_0_535 617443 617547 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_527_c_0 Rep_527_c_0_536 617714 620863 + 1.B.14.6.1
pfam Rep_527_c_0 Rep_527_c_0_537 620896 622767 + SusD_RagB | SusD-like_3
CAZyme Rep_527_c_0 Rep_527_c_0_538 622852 625353 + GH43_2 | GH8
CAZyme Rep_527_c_0 Rep_527_c_0_539 625594 627306 - CBM91 | GH43_12
CAZyme Rep_527_c_0 Rep_527_c_0_540 627568 628527 + CE1
CAZyme Rep_527_c_0 Rep_527_c_0_541 628549 630999 + GH95
CAZyme Rep_527_c_0 Rep_527_c_0_542 631039 632646 + CBM91 | GH43_10
CAZyme Rep_527_c_0 Rep_527_c_0_543 632810 634777 + GH97
CAZyme Rep_527_c_0 Rep_527_c_0_544 634793 636181 + CBM6 | GH43_29
CAZyme Rep_527_c_0 Rep_527_c_0_545 636240 637565 + CBM6 | GH43_29
CAZyme Rep_527_c_0 Rep_527_c_0_546 637595 638998 + CBM6 | GH43_29
CAZyme Rep_527_c_0 Rep_527_c_0_547 639015 641693 + GH31_4
CAZyme Rep_527_c_0 Rep_527_c_0_548 641716 642606 + CE6
TF Rep_527_c_0 Rep_527_c_0_549 642666 646742 - HTH_AraC
CAZyme Rep_527_c_0 Rep_527_c_0_550 647090 648712 + CE20 | CE20
TC Rep_527_c_0 Rep_527_c_0_551 648722 650218 + 2.A.2.3.4
CAZyme Rep_527_c_0 Rep_527_c_0_552 650234 651382 + GH10
CAZyme Rep_527_c_0 Rep_527_c_0_553 651432 652409 + GH43_1
CAZyme Rep_527_c_0 Rep_527_c_0_554 652402 654426 + GH67
TC Rep_527_c_0 Rep_527_c_0_555 654597 657053 - 1.B.14.8.2
CAZyme Rep_527_c_0 Rep_527_c_0_556 657170 658279 + CE1
Gene ID: Rep_527_c_0_527
Type: TC
Location: 608886 - 609854 (+)
Gene ID: Rep_527_c_0_528
Type: TC
Location: 609888 - 611225 (+)
Gene ID: Rep_527_c_0_529
Type: TC
Location: 611238 - 612227 (+)
Gene ID: Rep_527_c_0_530
Type: TC
Location: 612254 - 612880 (+)
Gene ID: Rep_527_c_0_531
Type: TC
Location: 612893 - 613477 (+)
Gene ID: Rep_527_c_0_532
Type: TC
Location: 613497 - 614099 (+)
Gene ID: Rep_527_c_0_533
Type: pfam
Location: 614275 - 615309 (+)
Gene ID: Rep_527_c_0_534
Type: TC
Location: 615764 - 617041 (+)
Gene ID: Rep_527_c_0_535
Type:
Location: 617443 - 617547 (+)
Gene ID: Rep_527_c_0_536
Type: TC
Location: 617714 - 620863 (+)
Gene ID: Rep_527_c_0_537
Type: pfam
Location: 620896 - 622767 (+)
Gene ID: Rep_527_c_0_538
Type: CAZyme
Location: 622852 - 625353 (+)
Gene ID: Rep_527_c_0_539
Type: CAZyme
Location: 625594 - 627306 (-)
Gene ID: Rep_527_c_0_540
Type: CAZyme
Location: 627568 - 628527 (+)
Gene ID: Rep_527_c_0_541
Type: CAZyme
Location: 628549 - 630999 (+)
Gene ID: Rep_527_c_0_542
Type: CAZyme
Location: 631039 - 632646 (+)
Gene ID: Rep_527_c_0_543
Type: CAZyme
Location: 632810 - 634777 (+)
Gene ID: Rep_527_c_0_544
Type: CAZyme
Location: 634793 - 636181 (+)
Gene ID: Rep_527_c_0_545
Type: CAZyme
Location: 636240 - 637565 (+)
Gene ID: Rep_527_c_0_546
Type: CAZyme
Location: 637595 - 638998 (+)
Gene ID: Rep_527_c_0_547
Type: CAZyme
Location: 639015 - 641693 (+)
Gene ID: Rep_527_c_0_548
Type: CAZyme
Location: 641716 - 642606 (+)
Gene ID: Rep_527_c_0_549
Type: TF
Location: 642666 - 646742 (-)
Gene ID: Rep_527_c_0_550
Type: CAZyme
Location: 647090 - 648712 (+)
Gene ID: Rep_527_c_0_551
Type: TC
Location: 648722 - 650218 (+)
Gene ID: Rep_527_c_0_552
Type: CAZyme
Location: 650234 - 651382 (+)
Gene ID: Rep_527_c_0_553
Type: CAZyme
Location: 651432 - 652409 (+)
Gene ID: Rep_527_c_0_554
Type: CAZyme
Location: 652402 - 654426 (+)
Gene ID: Rep_527_c_0_555
Type: TC
Location: 654597 - 657053 (-)
Gene ID: Rep_527_c_0_556
Type: CAZyme
Location: 657170 - 658279 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_527_c_0_544 vegetarian > vegan 1.97737 0.04565
Rep_527_c_0_547 vegetarian > vegan 1.80148 0.03027
Rep_527_c_0_548 vegetarian > vegan 2.15488 0.04230

🧭 Explore Read Mapping of CGC

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