Cluster: Rep_527_CGC7
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_02863
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_416 | 477832 | 480957 | + | 1.B.14.6.1 |
| pfam | Rep_527_c_0 | Rep_527_c_0_417 | 480977 | 482959 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_527_c_0 | Rep_527_c_0_418 | 483000 | 486020 | + | 1.B.14.6.1 |
| TC | Rep_527_c_0 | Rep_527_c_0_419 | 486039 | 487790 | + | 8.A.46.1.3 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_420 | 487837 | 489915 | + | PL11_1 |
| pfam | Rep_527_c_0 | Rep_527_c_0_421 | 490068 | 492065 | - | FBPase_2 |
| TC | Rep_527_c_0 | Rep_527_c_0_422 | 492089 | 493750 | - | 2.A.81.1.2 |
| pfam | Rep_527_c_0 | Rep_527_c_0_423 | 493912 | 496101 | - | Gln-synt_C | GSIII_N | Gln-synt_C-ter |
| STP | Rep_527_c_0 | Rep_527_c_0_424 | 496158 | 497387 | - | Aminotran_1_2 |
| TC | Rep_527_c_0 | Rep_527_c_0_425 | 497545 | 498432 | + | 2.A.115.1.1 |
| STP | Rep_527_c_0 | Rep_527_c_0_426 | 498439 | 499035 | + | cNMP_binding |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_427 | 499074 | 500321 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_527_c_0 | Rep_527_c_0_428 | 500326 | 501984 | - | 4.C.1.1.4 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_429 | 502111 | 503811 | - | GH13_38 |
Gene ID: Rep_527_c_0_416
Type: TC
Location: 477832 - 480957 (+)
Type: TC
Location: 477832 - 480957 (+)
Gene ID: Rep_527_c_0_417
Type: pfam
Location: 480977 - 482959 (+)
Type: pfam
Location: 480977 - 482959 (+)
Gene ID: Rep_527_c_0_418
Type: TC
Location: 483000 - 486020 (+)
Type: TC
Location: 483000 - 486020 (+)
Gene ID: Rep_527_c_0_419
Type: TC
Location: 486039 - 487790 (+)
Type: TC
Location: 486039 - 487790 (+)
Gene ID: Rep_527_c_0_420
Type: CAZyme
Location: 487837 - 489915 (+)
Type: CAZyme
Location: 487837 - 489915 (+)
Gene ID: Rep_527_c_0_421
Type: pfam
Location: 490068 - 492065 (-)
Type: pfam
Location: 490068 - 492065 (-)
Gene ID: Rep_527_c_0_422
Type: TC
Location: 492089 - 493750 (-)
Type: TC
Location: 492089 - 493750 (-)
Gene ID: Rep_527_c_0_423
Type: pfam
Location: 493912 - 496101 (-)
Type: pfam
Location: 493912 - 496101 (-)
Gene ID: Rep_527_c_0_424
Type: STP
Location: 496158 - 497387 (-)
Type: STP
Location: 496158 - 497387 (-)
Gene ID: Rep_527_c_0_425
Type: TC
Location: 497545 - 498432 (+)
Type: TC
Location: 497545 - 498432 (+)
Gene ID: Rep_527_c_0_426
Type: STP
Location: 498439 - 499035 (+)
Type: STP
Location: 498439 - 499035 (+)
Gene ID: Rep_527_c_0_427
Type:
Location: 499074 - 500321 (-)
Type:
Location: 499074 - 500321 (-)
Gene ID: Rep_527_c_0_428
Type: TC
Location: 500326 - 501984 (-)
Type: TC
Location: 500326 - 501984 (-)
Gene ID: Rep_527_c_0_429
Type: CAZyme
Location: 502111 - 503811 (-)
Type: CAZyme
Location: 502111 - 503811 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.