Cluster: Rep_527_CGC61
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3365 | 3986499 | 3987629 | - | GT28 |
| TC | Rep_527_c_0 | Rep_527_c_0_3366 | 3987669 | 3988919 | - | 2.A.103.1.3 |
| pfam | Rep_527_c_0 | Rep_527_c_0_3367 | 3988949 | 3990280 | - | Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N |
| TC | Rep_527_c_0 | Rep_527_c_0_3368 | 3990285 | 3991553 | - | 9.B.146.1.3 |
Gene ID: Rep_527_c_0_3365
Type: CAZyme
Location: 3986499 - 3987629 (-)
Type: CAZyme
Location: 3986499 - 3987629 (-)
Gene ID: Rep_527_c_0_3366
Type: TC
Location: 3987669 - 3988919 (-)
Type: TC
Location: 3987669 - 3988919 (-)
Gene ID: Rep_527_c_0_3367
Type: pfam
Location: 3988949 - 3990280 (-)
Type: pfam
Location: 3988949 - 3990280 (-)
Gene ID: Rep_527_c_0_3368
Type: TC
Location: 3990285 - 3991553 (-)
Type: TC
Location: 3990285 - 3991553 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.