Cluster: Rep_527_CGC6
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_397 | 457848 | 459938 | + | GH20 |
| pfam | Rep_527_c_0 | Rep_527_c_0_398 | 459945 | 460979 | - | OprB |
| TC | Rep_527_c_0 | Rep_527_c_0_399 | 460976 | 463624 | - | 3.A.3.4.1 |
Gene ID: Rep_527_c_0_397
Type: CAZyme
Location: 457848 - 459938 (+)
Type: CAZyme
Location: 457848 - 459938 (+)
Gene ID: Rep_527_c_0_398
Type: pfam
Location: 459945 - 460979 (-)
Type: pfam
Location: 459945 - 460979 (-)
Gene ID: Rep_527_c_0_399
Type: TC
Location: 460976 - 463624 (-)
Type: TC
Location: 460976 - 463624 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.