Cluster: Rep_527_CGC59
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: arabinogalactan
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_00225
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3323 | 3926868 | 3929591 | + | GH97 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3324 | 3929608 | 3932022 | + | CBM32 | GH43_34 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3325 | 3932042 | 3934462 | + | GH127 |
| peptidase | Rep_527_c_0 | Rep_527_c_0_3326 | 3934571 | 3936835 | + | S09.UPB |
| TC | Rep_527_c_0 | Rep_527_c_0_3327 | 3936986 | 3937987 | + | 8.A.5.1.3 |
| TC | Rep_527_c_0 | Rep_527_c_0_3328 | 3938136 | 3939437 | + | 9.A.40.1.2 |
Gene ID: Rep_527_c_0_3323
Type: CAZyme
Location: 3926868 - 3929591 (+)
Type: CAZyme
Location: 3926868 - 3929591 (+)
Gene ID: Rep_527_c_0_3324
Type: CAZyme
Location: 3929608 - 3932022 (+)
Type: CAZyme
Location: 3929608 - 3932022 (+)
Gene ID: Rep_527_c_0_3325
Type: CAZyme
Location: 3932042 - 3934462 (+)
Type: CAZyme
Location: 3932042 - 3934462 (+)
Gene ID: Rep_527_c_0_3326
Type: peptidase
Location: 3934571 - 3936835 (+)
Type: peptidase
Location: 3934571 - 3936835 (+)
Gene ID: Rep_527_c_0_3327
Type: TC
Location: 3936986 - 3937987 (+)
Type: TC
Location: 3936986 - 3937987 (+)
Gene ID: Rep_527_c_0_3328
Type: TC
Location: 3938136 - 3939437 (+)
Type: TC
Location: 3938136 - 3939437 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.