Cluster: Rep_527_CGC56
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_527
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_3229 | 3817501 | 3818352 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_3230 | 3818366 | 3819244 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_527_c_0 | Rep_527_c_0_3231 | 3819241 | 3819621 | + | GntR |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3232 | 3819710 | 3820930 | - | GT30 |
Gene ID: Rep_527_c_0_3229
Type: TC
Location: 3817501 - 3818352 (+)
Type: TC
Location: 3817501 - 3818352 (+)
Gene ID: Rep_527_c_0_3230
Type:
Location: 3818366 - 3819244 (+)
Type:
Location: 3818366 - 3819244 (+)
Gene ID: Rep_527_c_0_3231
Type: TF
Location: 3819241 - 3819621 (+)
Type: TF
Location: 3819241 - 3819621 (+)
Gene ID: Rep_527_c_0_3232
Type: CAZyme
Location: 3819710 - 3820930 (-)
Type: CAZyme
Location: 3819710 - 3820930 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.