Cluster: Rep_527_CGC55
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate: pectin/galactan
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_00031
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_527_c_0 | Rep_527_c_0_3144 | 3697549 | 3700521 | + | 1.B.14.6.1 |
| TC | Rep_527_c_0 | Rep_527_c_0_3145 | 3700543 | 3702114 | + | 8.A.46.1.1 |
| pfam | Rep_527_c_0 | Rep_527_c_0_3146 | 3702133 | 3703581 | + | SusE | DUF5111 | DUF5114 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3147 | 3703596 | 3704693 | + | GH53 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3148 | 3704776 | 3707268 | + | GH2 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3149 | 3707275 | 3708288 | + | GH53 |
| pfam | Rep_527_c_0 | Rep_527_c_0_3150 | 3708814 | 3710460 | + | DUF6377 |
| TC | Rep_527_c_0 | Rep_527_c_0_3151 | 3710675 | 3713704 | + | 1.B.14.6.1 |
| TC | Rep_527_c_0 | Rep_527_c_0_3152 | 3713723 | 3715273 | + | 8.A.46.1.3 |
| pfam | Rep_527_c_0 | Rep_527_c_0_3153 | 3715293 | 3716810 | + | SusE | SusF_SusE | SusF_SusE |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3154 | 3716831 | 3718630 | + | GH66 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3155 | 3718645 | 3720801 | + | GH97 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3156 | 3720975 | 3723461 | + | GH31 |
Gene ID: Rep_527_c_0_3144
Type: TC
Location: 3697549 - 3700521 (+)
Type: TC
Location: 3697549 - 3700521 (+)
Gene ID: Rep_527_c_0_3145
Type: TC
Location: 3700543 - 3702114 (+)
Type: TC
Location: 3700543 - 3702114 (+)
Gene ID: Rep_527_c_0_3146
Type: pfam
Location: 3702133 - 3703581 (+)
Type: pfam
Location: 3702133 - 3703581 (+)
Gene ID: Rep_527_c_0_3147
Type: CAZyme
Location: 3703596 - 3704693 (+)
Type: CAZyme
Location: 3703596 - 3704693 (+)
Gene ID: Rep_527_c_0_3148
Type: CAZyme
Location: 3704776 - 3707268 (+)
Type: CAZyme
Location: 3704776 - 3707268 (+)
Gene ID: Rep_527_c_0_3149
Type: CAZyme
Location: 3707275 - 3708288 (+)
Type: CAZyme
Location: 3707275 - 3708288 (+)
Gene ID: Rep_527_c_0_3150
Type: pfam
Location: 3708814 - 3710460 (+)
Type: pfam
Location: 3708814 - 3710460 (+)
Gene ID: Rep_527_c_0_3151
Type: TC
Location: 3710675 - 3713704 (+)
Type: TC
Location: 3710675 - 3713704 (+)
Gene ID: Rep_527_c_0_3152
Type: TC
Location: 3713723 - 3715273 (+)
Type: TC
Location: 3713723 - 3715273 (+)
Gene ID: Rep_527_c_0_3153
Type: pfam
Location: 3715293 - 3716810 (+)
Type: pfam
Location: 3715293 - 3716810 (+)
Gene ID: Rep_527_c_0_3154
Type: CAZyme
Location: 3716831 - 3718630 (+)
Type: CAZyme
Location: 3716831 - 3718630 (+)
Gene ID: Rep_527_c_0_3155
Type: CAZyme
Location: 3718645 - 3720801 (+)
Type: CAZyme
Location: 3718645 - 3720801 (+)
Gene ID: Rep_527_c_0_3156
Type: CAZyme
Location: 3720975 - 3723461 (+)
Type: CAZyme
Location: 3720975 - 3723461 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_527_c_0_3151 | vegetarian > vegan | 2.69935 | 0.01821 |
| Rep_527_c_0_3152 | vegetarian > vegan | 2.53802 | 0.00667 |
| Rep_527_c_0_3155 | vegetarian > vegan | 2.44429 | 0.01631 |