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Cluster: Rep_527_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_527_c_0 Rep_527_c_0_3059 3597803 3598477 + 9.B.104.1.5
TC Rep_527_c_0 Rep_527_c_0_3060 3598452 3599345 + 9.B.104.1.2
pfam Rep_527_c_0 Rep_527_c_0_3061 3599342 3600400 + Exo_endo_phos
peptidase Rep_527_c_0 Rep_527_c_0_3062 3600419 3602512 + M03.UPA
TC Rep_527_c_0 Rep_527_c_0_3063 3602718 3605711 + 2.A.6.4.3
TF Rep_527_c_0 Rep_527_c_0_3064 3605911 3610005 - HTH_AraC
NULL(UNKNOWN) Rep_527_c_0 Rep_527_c_0_3065 3610180 3611709 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_527_c_0 Rep_527_c_0_3066 3611730 3614771 + 1.B.14.6.1
TC Rep_527_c_0 Rep_527_c_0_3067 3614784 3616481 + 8.A.46.1.3
CAZyme Rep_527_c_0 Rep_527_c_0_3068 3616569 3618182 + GH30_4
CAZyme Rep_527_c_0 Rep_527_c_0_3069 3618191 3620596 + GH2
pfam Rep_527_c_0 Rep_527_c_0_3070 3620777 3621262 - LuxS
pfam Rep_527_c_0 Rep_527_c_0_3071 3621270 3621965 - PNP_UDP_1
TC Rep_527_c_0 Rep_527_c_0_3072 3622056 3624545 + 9.B.144.1.4
CAZyme Rep_527_c_0 Rep_527_c_0_3073 3624605 3625369 - GT2
CAZyme Rep_527_c_0 Rep_527_c_0_3074 3625362 3626624 - GT4
CAZyme Rep_527_c_0 Rep_527_c_0_3075 3626680 3627729 - GT4
pfam Rep_527_c_0 Rep_527_c_0_3076 3627726 3628643 - Glycos_transf_2 | GNT-I
CAZyme Rep_527_c_0 Rep_527_c_0_3077 3628645 3629664 - GT94
CAZyme Rep_527_c_0 Rep_527_c_0_3078 3629677 3630639 - GT2
TC Rep_527_c_0 Rep_527_c_0_3079 3630697 3632142 - 2.A.66.2.6
pfam Rep_527_c_0 Rep_527_c_0_3080 3632241 3634283 - tRNA-synt_1 | tRNA_bind | Anticodon_1 | tRNA-synt_1g | Anticodon_3
TC Rep_527_c_0 Rep_527_c_0_3081 3634610 3637864 + 1.B.14.6.1
TC Rep_527_c_0 Rep_527_c_0_3082 3637876 3639423 + 8.A.46.1.2
pfam Rep_527_c_0 Rep_527_c_0_3083 3639444 3640337 + GDPD | DUF4996
pfam Rep_527_c_0 Rep_527_c_0_3084 3640334 3641560 + DUF218
CAZyme Rep_527_c_0 Rep_527_c_0_3085 3641595 3644363 + GH92
CAZyme Rep_527_c_0 Rep_527_c_0_3086 3644976 3646973 + GH20
CAZyme Rep_527_c_0 Rep_527_c_0_3087 3646987 3650568 + GH2
Gene ID: Rep_527_c_0_3059
Type: TC
Location: 3597803 - 3598477 (+)
Gene ID: Rep_527_c_0_3060
Type: TC
Location: 3598452 - 3599345 (+)
Gene ID: Rep_527_c_0_3061
Type: pfam
Location: 3599342 - 3600400 (+)
Gene ID: Rep_527_c_0_3062
Type: peptidase
Location: 3600419 - 3602512 (+)
Gene ID: Rep_527_c_0_3063
Type: TC
Location: 3602718 - 3605711 (+)
Gene ID: Rep_527_c_0_3064
Type: TF
Location: 3605911 - 3610005 (-)
Gene ID: Rep_527_c_0_3065
Type:
Location: 3610180 - 3611709 (+)
Gene ID: Rep_527_c_0_3066
Type: TC
Location: 3611730 - 3614771 (+)
Gene ID: Rep_527_c_0_3067
Type: TC
Location: 3614784 - 3616481 (+)
Gene ID: Rep_527_c_0_3068
Type: CAZyme
Location: 3616569 - 3618182 (+)
Gene ID: Rep_527_c_0_3069
Type: CAZyme
Location: 3618191 - 3620596 (+)
Gene ID: Rep_527_c_0_3070
Type: pfam
Location: 3620777 - 3621262 (-)
Gene ID: Rep_527_c_0_3071
Type: pfam
Location: 3621270 - 3621965 (-)
Gene ID: Rep_527_c_0_3072
Type: TC
Location: 3622056 - 3624545 (+)
Gene ID: Rep_527_c_0_3073
Type: CAZyme
Location: 3624605 - 3625369 (-)
Gene ID: Rep_527_c_0_3074
Type: CAZyme
Location: 3625362 - 3626624 (-)
Gene ID: Rep_527_c_0_3075
Type: CAZyme
Location: 3626680 - 3627729 (-)
Gene ID: Rep_527_c_0_3076
Type: pfam
Location: 3627726 - 3628643 (-)
Gene ID: Rep_527_c_0_3077
Type: CAZyme
Location: 3628645 - 3629664 (-)
Gene ID: Rep_527_c_0_3078
Type: CAZyme
Location: 3629677 - 3630639 (-)
Gene ID: Rep_527_c_0_3079
Type: TC
Location: 3630697 - 3632142 (-)
Gene ID: Rep_527_c_0_3080
Type: pfam
Location: 3632241 - 3634283 (-)
Gene ID: Rep_527_c_0_3081
Type: TC
Location: 3634610 - 3637864 (+)
Gene ID: Rep_527_c_0_3082
Type: TC
Location: 3637876 - 3639423 (+)
Gene ID: Rep_527_c_0_3083
Type: pfam
Location: 3639444 - 3640337 (+)
Gene ID: Rep_527_c_0_3084
Type: pfam
Location: 3640334 - 3641560 (+)
Gene ID: Rep_527_c_0_3085
Type: CAZyme
Location: 3641595 - 3644363 (+)
Gene ID: Rep_527_c_0_3086
Type: CAZyme
Location: 3644976 - 3646973 (+)
Gene ID: Rep_527_c_0_3087
Type: CAZyme
Location: 3646987 - 3650568 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_527_c_0_3086 vegetarian > vegan 1.08433 0.04565

🧭 Explore Read Mapping of CGC

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