Cluster: Rep_527_CGC52
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 10
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_02953
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3002 | 3512197 | 3514347 | - | CE12 | GH105 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3003 | 3514378 | 3516315 | - | PL11_1 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3004 | 3516332 | 3517771 | - | GH28 |
| pfam | Rep_527_c_0 | Rep_527_c_0_3005 | 3517768 | 3518301 | - | DUF4450 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3006 | 3518582 | 3520654 | + | GH42 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3007 | 3520752 | 3523997 | - | PL26 |
| pfam | Rep_527_c_0 | Rep_527_c_0_3008 | 3524149 | 3526275 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_527_c_0 | Rep_527_c_0_3009 | 3526290 | 3529427 | - | 1.B.14.6.1 |
| pfam | Rep_527_c_0 | Rep_527_c_0_3010 | 3529532 | 3530719 | - | Phage_int_SAM_1 | Phage_int_SAM_5 |
| TC | Rep_527_c_0 | Rep_527_c_0_3011 | 3531257 | 3534598 | + | 1.B.14.6.1 |
| pfam | Rep_527_c_0 | Rep_527_c_0_3012 | 3534621 | 3536960 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3013 | 3537266 | 3540265 | + | GH2 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3014 | 3540339 | 3542777 | - | GH2 |
| pfam | Rep_527_c_0 | Rep_527_c_0_3015 | 3542918 | 3545752 | + | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2 |
| TC | Rep_527_c_0 | Rep_527_c_0_3016 | 3545774 | 3546718 | + | 2.A.115.1.2 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3017 | 3546857 | 3549409 | + | GH2 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3018 | 3549470 | 3550606 | + | GH20 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_3019 | 3550603 | 3551778 | + | GH20 |
| sulfatase | Rep_527_c_0 | Rep_527_c_0_3020 | 3551925 | 3552509 | + | S1_7 |
| TC | Rep_527_c_0 | Rep_527_c_0_3021 | 3552641 | 3555766 | + | 1.B.14.6.1 |
Gene ID: Rep_527_c_0_3002
Type: CAZyme
Location: 3512197 - 3514347 (-)
Type: CAZyme
Location: 3512197 - 3514347 (-)
Gene ID: Rep_527_c_0_3003
Type: CAZyme
Location: 3514378 - 3516315 (-)
Type: CAZyme
Location: 3514378 - 3516315 (-)
Gene ID: Rep_527_c_0_3004
Type: CAZyme
Location: 3516332 - 3517771 (-)
Type: CAZyme
Location: 3516332 - 3517771 (-)
Gene ID: Rep_527_c_0_3005
Type: pfam
Location: 3517768 - 3518301 (-)
Type: pfam
Location: 3517768 - 3518301 (-)
Gene ID: Rep_527_c_0_3006
Type: CAZyme
Location: 3518582 - 3520654 (+)
Type: CAZyme
Location: 3518582 - 3520654 (+)
Gene ID: Rep_527_c_0_3007
Type: CAZyme
Location: 3520752 - 3523997 (-)
Type: CAZyme
Location: 3520752 - 3523997 (-)
Gene ID: Rep_527_c_0_3008
Type: pfam
Location: 3524149 - 3526275 (-)
Type: pfam
Location: 3524149 - 3526275 (-)
Gene ID: Rep_527_c_0_3009
Type: TC
Location: 3526290 - 3529427 (-)
Type: TC
Location: 3526290 - 3529427 (-)
Gene ID: Rep_527_c_0_3010
Type: pfam
Location: 3529532 - 3530719 (-)
Type: pfam
Location: 3529532 - 3530719 (-)
Gene ID: Rep_527_c_0_3011
Type: TC
Location: 3531257 - 3534598 (+)
Type: TC
Location: 3531257 - 3534598 (+)
Gene ID: Rep_527_c_0_3012
Type: pfam
Location: 3534621 - 3536960 (+)
Type: pfam
Location: 3534621 - 3536960 (+)
Gene ID: Rep_527_c_0_3013
Type: CAZyme
Location: 3537266 - 3540265 (+)
Type: CAZyme
Location: 3537266 - 3540265 (+)
Gene ID: Rep_527_c_0_3014
Type: CAZyme
Location: 3540339 - 3542777 (-)
Type: CAZyme
Location: 3540339 - 3542777 (-)
Gene ID: Rep_527_c_0_3015
Type: pfam
Location: 3542918 - 3545752 (+)
Type: pfam
Location: 3542918 - 3545752 (+)
Gene ID: Rep_527_c_0_3016
Type: TC
Location: 3545774 - 3546718 (+)
Type: TC
Location: 3545774 - 3546718 (+)
Gene ID: Rep_527_c_0_3017
Type: CAZyme
Location: 3546857 - 3549409 (+)
Type: CAZyme
Location: 3546857 - 3549409 (+)
Gene ID: Rep_527_c_0_3018
Type: CAZyme
Location: 3549470 - 3550606 (+)
Type: CAZyme
Location: 3549470 - 3550606 (+)
Gene ID: Rep_527_c_0_3019
Type: CAZyme
Location: 3550603 - 3551778 (+)
Type: CAZyme
Location: 3550603 - 3551778 (+)
Gene ID: Rep_527_c_0_3020
Type: sulfatase
Location: 3551925 - 3552509 (+)
Type: sulfatase
Location: 3551925 - 3552509 (+)
Gene ID: Rep_527_c_0_3021
Type: TC
Location: 3552641 - 3555766 (+)
Type: TC
Location: 3552641 - 3555766 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.