Cluster: Rep_527_CGC46
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 11
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_09505
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2817 | 3267095 | 3269035 | - | GH97 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2818 | 3269203 | 3270207 | - | GH43_5 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2819 | 3270340 | 3272229 | - | GH43_4 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_2820 | 3272300 | 3274036 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_527_c_0 | Rep_527_c_0_2821 | 3274118 | 3275878 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_527_c_0 | Rep_527_c_0_2822 | 3275906 | 3279100 | - | 1.B.14.6.1 |
| TF | Rep_527_c_0 | Rep_527_c_0_2823 | 3279457 | 3283656 | - | HTH_AraC |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2824 | 3283895 | 3285874 | + | GH51_2 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_2825 | 3285940 | 3286053 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2826 | 3286426 | 3289773 | - | GH2 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2827 | 3289939 | 3292164 | - | GH92 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2828 | 3292192 | 3294465 | - | GH92 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_2829 | 3294413 | 3294502 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2830 | 3294493 | 3296709 | - | GH92 |
| TC | Rep_527_c_0 | Rep_527_c_0_2831 | 3296856 | 3298622 | - | 8.A.46.2.2 |
| TC | Rep_527_c_0 | Rep_527_c_0_2832 | 3298642 | 3302064 | - | 1.B.14.6.2 |
| STP | Rep_527_c_0 | Rep_527_c_0_2833 | 3302217 | 3303218 | - | FecR |
| TF | Rep_527_c_0 | Rep_527_c_0_2834 | 3303211 | 3303774 | - | GerE |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2835 | 3303928 | 3306033 | - | GH97 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_2836 | 3306030 | 3306254 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_527_c_0 | Rep_527_c_0_2837 | 3306294 | 3306974 | - | Lipase_GDSL_2 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2838 | 3306997 | 3309255 | - | GH115 |
| NULL(UNKNOWN) | Rep_527_c_0 | Rep_527_c_0_2839 | 3309239 | 3309406 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2840 | 3309717 | 3312560 | + | GH3 |
Gene ID: Rep_527_c_0_2817
Type: CAZyme
Location: 3267095 - 3269035 (-)
Type: CAZyme
Location: 3267095 - 3269035 (-)
Gene ID: Rep_527_c_0_2818
Type: CAZyme
Location: 3269203 - 3270207 (-)
Type: CAZyme
Location: 3269203 - 3270207 (-)
Gene ID: Rep_527_c_0_2819
Type: CAZyme
Location: 3270340 - 3272229 (-)
Type: CAZyme
Location: 3270340 - 3272229 (-)
Gene ID: Rep_527_c_0_2820
Type:
Location: 3272300 - 3274036 (-)
Type:
Location: 3272300 - 3274036 (-)
Gene ID: Rep_527_c_0_2821
Type: pfam
Location: 3274118 - 3275878 (-)
Type: pfam
Location: 3274118 - 3275878 (-)
Gene ID: Rep_527_c_0_2822
Type: TC
Location: 3275906 - 3279100 (-)
Type: TC
Location: 3275906 - 3279100 (-)
Gene ID: Rep_527_c_0_2823
Type: TF
Location: 3279457 - 3283656 (-)
Type: TF
Location: 3279457 - 3283656 (-)
Gene ID: Rep_527_c_0_2824
Type: CAZyme
Location: 3283895 - 3285874 (+)
Type: CAZyme
Location: 3283895 - 3285874 (+)
Gene ID: Rep_527_c_0_2825
Type:
Location: 3285940 - 3286053 (-)
Type:
Location: 3285940 - 3286053 (-)
Gene ID: Rep_527_c_0_2826
Type: CAZyme
Location: 3286426 - 3289773 (-)
Type: CAZyme
Location: 3286426 - 3289773 (-)
Gene ID: Rep_527_c_0_2827
Type: CAZyme
Location: 3289939 - 3292164 (-)
Type: CAZyme
Location: 3289939 - 3292164 (-)
Gene ID: Rep_527_c_0_2828
Type: CAZyme
Location: 3292192 - 3294465 (-)
Type: CAZyme
Location: 3292192 - 3294465 (-)
Gene ID: Rep_527_c_0_2829
Type:
Location: 3294413 - 3294502 (-)
Type:
Location: 3294413 - 3294502 (-)
Gene ID: Rep_527_c_0_2830
Type: CAZyme
Location: 3294493 - 3296709 (-)
Type: CAZyme
Location: 3294493 - 3296709 (-)
Gene ID: Rep_527_c_0_2831
Type: TC
Location: 3296856 - 3298622 (-)
Type: TC
Location: 3296856 - 3298622 (-)
Gene ID: Rep_527_c_0_2832
Type: TC
Location: 3298642 - 3302064 (-)
Type: TC
Location: 3298642 - 3302064 (-)
Gene ID: Rep_527_c_0_2833
Type: STP
Location: 3302217 - 3303218 (-)
Type: STP
Location: 3302217 - 3303218 (-)
Gene ID: Rep_527_c_0_2834
Type: TF
Location: 3303211 - 3303774 (-)
Type: TF
Location: 3303211 - 3303774 (-)
Gene ID: Rep_527_c_0_2835
Type: CAZyme
Location: 3303928 - 3306033 (-)
Type: CAZyme
Location: 3303928 - 3306033 (-)
Gene ID: Rep_527_c_0_2836
Type:
Location: 3306030 - 3306254 (-)
Type:
Location: 3306030 - 3306254 (-)
Gene ID: Rep_527_c_0_2837
Type: pfam
Location: 3306294 - 3306974 (-)
Type: pfam
Location: 3306294 - 3306974 (-)
Gene ID: Rep_527_c_0_2838
Type: CAZyme
Location: 3306997 - 3309255 (-)
Type: CAZyme
Location: 3306997 - 3309255 (-)
Gene ID: Rep_527_c_0_2839
Type:
Location: 3309239 - 3309406 (-)
Type:
Location: 3309239 - 3309406 (-)
Gene ID: Rep_527_c_0_2840
Type: CAZyme
Location: 3309717 - 3312560 (+)
Type: CAZyme
Location: 3309717 - 3312560 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.