Cluster: Rep_527_CGC45
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_527
- CGC Family ID: CGCFAM_06353
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2795 | 3242879 | 3243832 | + | GT32 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2796 | 3243833 | 3244648 | - | GT2 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2797 | 3244630 | 3245586 | - | GT8 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2798 | 3245590 | 3246609 | - | GT113 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2799 | 3246614 | 3247723 | - | GLF | NAD_binding_8 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2800 | 3247956 | 3249101 | + | GT4 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2801 | 3249098 | 3249853 | + | Kdo |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2802 | 3249858 | 3250598 | + | GT32 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2803 | 3250595 | 3251353 | + | GT2 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2804 | 3251355 | 3252263 | - | Lip_A_acyltrans |
| TC | Rep_527_c_0 | Rep_527_c_0_2805 | 3252383 | 3254221 | + | 3.A.1.106.1 |
| CAZyme | Rep_527_c_0 | Rep_527_c_0_2806 | 3254241 | 3255278 | - | GT9 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2807 | 3255291 | 3255896 | - | DUF4254 |
| pfam | Rep_527_c_0 | Rep_527_c_0_2808 | 3256036 | 3257046 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| TC | Rep_527_c_0 | Rep_527_c_0_2809 | 3257206 | 3257442 | + | 3.D.1.6.4 |
Gene ID: Rep_527_c_0_2795
Type: CAZyme
Location: 3242879 - 3243832 (+)
Type: CAZyme
Location: 3242879 - 3243832 (+)
Gene ID: Rep_527_c_0_2796
Type: CAZyme
Location: 3243833 - 3244648 (-)
Type: CAZyme
Location: 3243833 - 3244648 (-)
Gene ID: Rep_527_c_0_2797
Type: CAZyme
Location: 3244630 - 3245586 (-)
Type: CAZyme
Location: 3244630 - 3245586 (-)
Gene ID: Rep_527_c_0_2798
Type: CAZyme
Location: 3245590 - 3246609 (-)
Type: CAZyme
Location: 3245590 - 3246609 (-)
Gene ID: Rep_527_c_0_2799
Type: pfam
Location: 3246614 - 3247723 (-)
Type: pfam
Location: 3246614 - 3247723 (-)
Gene ID: Rep_527_c_0_2800
Type: CAZyme
Location: 3247956 - 3249101 (+)
Type: CAZyme
Location: 3247956 - 3249101 (+)
Gene ID: Rep_527_c_0_2801
Type: pfam
Location: 3249098 - 3249853 (+)
Type: pfam
Location: 3249098 - 3249853 (+)
Gene ID: Rep_527_c_0_2802
Type: CAZyme
Location: 3249858 - 3250598 (+)
Type: CAZyme
Location: 3249858 - 3250598 (+)
Gene ID: Rep_527_c_0_2803
Type: CAZyme
Location: 3250595 - 3251353 (+)
Type: CAZyme
Location: 3250595 - 3251353 (+)
Gene ID: Rep_527_c_0_2804
Type: pfam
Location: 3251355 - 3252263 (-)
Type: pfam
Location: 3251355 - 3252263 (-)
Gene ID: Rep_527_c_0_2805
Type: TC
Location: 3252383 - 3254221 (+)
Type: TC
Location: 3252383 - 3254221 (+)
Gene ID: Rep_527_c_0_2806
Type: CAZyme
Location: 3254241 - 3255278 (-)
Type: CAZyme
Location: 3254241 - 3255278 (-)
Gene ID: Rep_527_c_0_2807
Type: pfam
Location: 3255291 - 3255896 (-)
Type: pfam
Location: 3255291 - 3255896 (-)
Gene ID: Rep_527_c_0_2808
Type: pfam
Location: 3256036 - 3257046 (+)
Type: pfam
Location: 3256036 - 3257046 (+)
Gene ID: Rep_527_c_0_2809
Type: TC
Location: 3257206 - 3257442 (+)
Type: TC
Location: 3257206 - 3257442 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.